PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G257400.1.p
Common NameGLYMA_10G257400, LOC100805192
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 353aa    MW: 38543.6 Da    PI: 4.6305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G257400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-112763161055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Glyma.10G257400.1.p 276 RRRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 316
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-14265331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.402266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13271325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-12272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-8276316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0017282320No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDPVEQISEE WSSLSGFYTA EEANFMSQLL GNCSLPENLC GNFNLGIPSA IWPGHESTIV  60
SVTGINESPY FHANGDNNNN NYLCFSQGSS STADSSNIFP TTSGNSYTLN DPVANIGYMS  120
TDFANLGPCN VQGSDSQQLN ENTHEELGLE VIADKKLQDR QECEVLVSEA AEEDINTNLE  180
KSGKRSRCSM QVRKSKKNVK PVKKPKSDSI SNSEEGRSPH LQGCCSENDD SSASQELNGG  240
GSSSLSLEDS TSLKLKGKKS TANRGSATDP QSVYARRRRE RINERLKILQ NLVPNGTKVD  300
ISTMLEEAVQ YVKFLQLQIK LLSSDDLWMY SPIAYNGMNI GLDLNITPTK QP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195203KKNVKPVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G257400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351770.0AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536579.10.0transcription factor bHLH84
RefseqXP_028183766.10.0transcription factor bHLH84-like
TrEMBLA0A445ISS20.0A0A445ISS2_GLYSO; Transcription factor bHLH84
TrEMBLK7LLF60.0K7LLF6_SOYBN; Uncharacterized protein
STRINGGLYMA10G40350.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-44bHLH family protein