PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G241300.1.p
Common NameGLYMA_10G241300, LOC100803786
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 254aa    MW: 28909 Da    PI: 8.0185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G241300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-0873122455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e E++RR+++     + r+llP       ++K s ++   + ++YIk+Lq
  Glyma.10G241300.1.p  73 MHRETEKQRRQEMTRLCTNFRSLLPLeY---IKGKRSISDHMHEGTNYIKYLQ 122
                          7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.04E-867126No hitNo description
SuperFamilySSF474595.76E-1268137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.99869121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-871137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-573122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNPLHPTDEL YFQIAPDNNY YSLPIQTTPE NQILHDPVMD GSALIHFTSQ MGTKGKQRED  60
FKTTTIDENK KWMHRETEKQ RRQEMTRLCT NFRSLLPLEY IKGKRSISDH MHEGTNYIKY  120
LQNKVKQLQA TRDKLMKLSN LSPVGSESGS LSTTHLPVCV IVHPCPGGVQ IKCSYSFGKY  180
ACPLSRVLDI VLKEGLDVVN CTSTKPDDRF IHTIRCEVPH MMTGNNYTEL QRKFVEAISS  240
SSLEERLSAP ENC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.378170.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G241300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536494.20.0transcription factor bHLH36
RefseqXP_028184038.10.0transcription factor bHLH36-like
TrEMBLA0A445IS070.0A0A445IS07_GLYSO; Transcription factor bHLH36
TrEMBLK7LL600.0K7LL60_SOYBN; Uncharacterized protein
STRINGGLYMA10G38620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-39bHLH family protein