PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G196600.1.p
Common NameGLYMA_10G196600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 388aa    MW: 43100.2 Da    PI: 8.7214
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G196600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-33116170155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl
  Glyma.10G196600.1.p 116 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 170
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.726113173IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-32113171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23116171IPR006447Myb domain, plants
SuperFamilySSF466891.54E-16116172IPR009057Homeodomain-like
PfamPF002491.1E-7118169IPR001005SANT/Myb domain
PfamPF143796.3E-13214259IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQKRREESDK IPVKRDSASS LPQPQSLVLF TSPFSPFPFL LPLSFAKWVI ISFSHNTIFF  60
TFSFFFASLR WGFKFHHRNR MFSRLIHPHE GQEDMQGGSN HAHLGDPCLV LTSDPKPRLR  120
WTADLHERFV DAVTQLGGAS KATPKAIMRT MNVKGLTLYH LKSHLQKYRL GKQSGKDSDE  180
GLKDGMSASY LQESPGTDNS SPKLPASDAN EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ  240
IRQDAERRYM GMLERACKML ADQFIGDVII DRDGQKFQGL ENKTSRSPLV DHGGFFPAAC  300
TEVGGMHVSE VPPILQPQGA ECSSESCLKS LESLGGLTLE GSPGGSKKRM LNLDSMVAPL  360
IWSEANTRTQ GIHLAQVNPP GMTRYGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-19116172157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-19116172157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-19116172157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-19116172157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-19116172258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.60930.0hypocotyl| pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G196600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951070.0BT095107.1 Soybean clone JCVI-FLGm-19M17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185945.10.0protein PHR1-LIKE 2-like isoform X1
TrEMBLA0A445IPV70.0A0A445IPV7_GLYSO; Protein PHR1-LIKE 2 isoform A
TrEMBLK7LKE60.0K7LKE6_SOYBN; Uncharacterized protein
STRINGGLYMA10G34050.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.15e-63G2-like family protein