PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G170800.1.p | ||||||||
Common Name | GLYMA_10G170800, LOC100802536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 422aa MW: 46185 Da PI: 8.1312 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.1 | 6e-13 | 39 | 65 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG C++G++C+F+H+p Glyma.10G170800.1.p 39 PGEPDCSYYMRTGLCRFGATCRFNHPP 65 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 86 | 110 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Glyma.10G170800.1.p 86 QPECQYYLKTGTCKFGATCKFHHPK 110 799********************96 PP | |||||||
3 | zf-CCCH | 38.6 | 1.8e-12 | 132 | 156 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Glyma.10G170800.1.p 132 EPECTYYLRTGQCKFGNTCKFHHPQ 156 799********************97 PP | |||||||
4 | zf-CCCH | 39 | 1.4e-12 | 282 | 308 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Glyma.10G170800.1.p 282 PGQPECQFYMKTGDCKFGAVCRFHHPQ 308 5789*********************97 PP | |||||||
5 | zf-CCCH | 38.1 | 2.5e-12 | 328 | 354 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Glyma.10G170800.1.p 328 PGEPLCVFYSRYGICKFGPSCKFDHPM 354 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.3E-7 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-10 | 40 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 43 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 44 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.14 | 83 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-10 | 86 | 110 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 87 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-5 | 89 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-6 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.939 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 132 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 132 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 135 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 281 | 308 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 281 | 309 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-9 | 283 | 308 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-6 | 285 | 311 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 287 | 309 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 327 | 354 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 327 | 355 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 329 | 354 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 330 | 355 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 332 | 353 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MENNNNNHNL IVPNPQDSLW MMNLRTGETM DSGSYPERPG EPDCSYYMRT GLCRFGATCR 60 FNHPPNRKLA IATARMIGEF PERIGQPECQ YYLKTGTCKF GATCKFHHPK DQAGIAGRVA 120 LNILGYPLRP NEPECTYYLR TGQCKFGNTC KFHHPQPSNM MLSLRGSPVY PTVHSPTTPG 180 QQSYAGGTYI PSPRWQGPSS YAPLILPQGV VSVPGWSAYS GQMGSISTSD SPQQAMRNGQ 240 TYGTSRQGEL AGSQGAYSQF RSGTVPVGFY TLQRENIFPE RPGQPECQFY MKTGDCKFGA 300 VCRFHHPQER LVPAPNCVLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMEIFSHN 360 ISASPSADAP SRHLLGSSSG TAALNLSSEG LVESSSAKPR RLSLSETRQI PSGDDDIDDD 420 G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.43212 | 0.0 | cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G170800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146802 | 1e-178 | BT146802.1 Lotus japonicus clone JCVI-FLLj-23L7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536159.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | I1LBV8 | 0.0 | I1LBV8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G31370.6 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 | Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-175 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G170800.1.p |
Entrez Gene | 100802536 |