PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G156600.1.p

Common Name

GLYMA_10G156600

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 333aa MW: 36924.3 Da PI: 5.2857

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G156600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	132	183	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P + + ++ + a+i Av+++k+L+ Glyma.10G156600.1.p 132 QRMTHIVVERNRRKQMNEYLSVLRSLMPDS---YIQRGDQASIIGGAVNFVKELE 183 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.58E-13	130	187	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	130	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-15	131	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.243	131	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	132	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-9	137	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MCLPEGERDR ERAMALEAVV FPQSQDPFGS GYGSVNTKDF YNYTLLAATY EQQHINKEEE 60 QGGASISTFQ PETSNYPYGD WTTSSSSSML PHLNNELQET TTTTSNTLDS LNTRPKRRRA 120 KSRKNKEEIE NQRMTHIVVE RNRRKQMNEY LSVLRSLMPD SYIQRGDQAS IIGGAVNFVK 180 ELEQRLHFLG AQKEGEGKSD DGGATNMPFS EFFTFPQYST GGGGGSDNSA AIGEDVSEVK 240 CGIADIEVTM VESHANLKIR SKKCPKQLLK LVSGLHTVRL TILHLNVTTT GEVVLYSLSV 300 KVEDDCKLGS VDDIAAAVYQ MLDRIQQEAM LN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	143	RMTHIVVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G156600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093468	0.0	BT093468.1 Soybean clone JCVI-FLGm-14K7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028183377.1	0.0	transcription factor bHLH94-like
Swissprot	Q9C7T4	3e-78	BH096_ARATH; Transcription factor bHLH96
TrEMBL	I1LBE5	0.0	I1LBE5_SOYBN; Uncharacterized protein
STRING	GLYMA10G29760.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135
Representative plant	OGRP253	15	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-79	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G156600.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]