PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 128aa MW: 14475.5 Da PI: 8.7221

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G144700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31	4.2e-10	52	76	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++lC +f tG+C+yGd+Ck+ H+ Glyma.10G144700.2.p 52 NRPLCFHFVNTGFCRYGDSCKYLHP 76 689*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.13E-16	4	50	No hit	No description
Pfam	PF06220	1.9E-10	4	39	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	16.662	50	78	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-8	51	79	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-6	51	77	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-8	52	76	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.0E-7	55	75	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MPVKKYYCDY CDKLFQDTPA DRKRHVQGIQ HHQAKARWYD SFKQQQIPPI PNRPLCFHFV 60 NTGFCRYGDS CKYLHPVPNN NVQQPPIVTT PSPSPGSVVG VSFGNLPPSL QPPPDGVYLH 120 LPFLDWG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.12707	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G144700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092028	0.0	BT092028.1 Soybean clone JCVI-FLGm-9K20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001236361.2	4e-90	putative U1 zinc finger protein
Refseq	XP_028182862.1	4e-90	zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q0JP11	2e-37	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A445IME8	2e-89	A0A445IME8_GLYSO; Zinc finger CCCH domain-containing protein 3 isoform B
TrEMBL	A0A445IMJ2	1e-89	A0A445IMJ2_GLYSO; Zinc finger CCCH domain-containing protein 3 isoform C
STRING	GLYMA10G28540.1	2e-89	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-26	C3H family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G144700.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]