PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G138800.2.p
Common NameGLYMA_10G138800, LOC100818543
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 450aa    MW: 49161.2 Da    PI: 8.2309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G138800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14262307454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           hn  Er+RRd+iN+++  L+el+P++      K +Ka++L  A+eY+k L
  Glyma.10G138800.2.p 262 VHNLCERKRRDKINKRMRILKELIPNC-----NKTDKASMLDDAIEYLKTL 307
                          5*************************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-18255316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19256319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.111258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-15261312No hitNo description
PfamPF000103.0E-12262307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAAEKMPDST KPGMTRSTSY LDSIYGKGSL ELVWENGQLH VQQGGSSSTS SVVTRMTPSC  60
EGSFNAKSAR LSSLYSLMDF PVQRDSALDN SQPNSHQSND QNSGKFAKAA NSSSKGLDRS  120
LVINSPKGSP GRQKNPLNSD TSNMVPRSEE TTPPDEQSEA VGHDSIHGSR GQYFNQTSSS  180
ARHRAKGKAH DTKQKYCDEG LLESSSLCSI GASNNRNVCS RTHDDIDDST YLSNNDEEPE  240
DVVKEKPAWE GTGVKRSRNA EVHNLCERKR RDKINKRMRI LKELIPNCNK TDKASMLDDA  300
IEYLKTLKLQ LQMMSMGAGF CMPFMMLPNA AHHMMNTPHL HQLMGLGMGF RPGTAMPCSL  360
PQFPITPLHG ITDNRVHMFG FPNQVPPMPI SHAPFIPMLG NPSTQPTPLA TSTNINLAEN  420
PASSQLTTLM ASSPKNLFIS GQAEYATKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271ERKRRD
2267272RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G138800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958540.0BT095854.1 Soybean clone JCVI-FLGm-15A10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589091.10.0transcription factor PIL1 isoform X1
TrEMBLK7LJB00.0K7LJB0_SOYBN; Uncharacterized protein
STRINGGLYMA10G27910.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.15e-38phytochrome interacting factor 3-like 1