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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G138800.2.p | ||||||||
Common Name | GLYMA_10G138800, LOC100818543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 450aa MW: 49161.2 Da PI: 8.2309 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.8 | 1.1e-14 | 262 | 307 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn Er+RRd+iN+++ L+el+P++ K +Ka++L A+eY+k L Glyma.10G138800.2.p 262 VHNLCERKRRDKINKRMRILKELIPNC-----NKTDKASMLDDAIEYLKTL 307 5*************************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-18 | 255 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-19 | 256 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.111 | 258 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-15 | 261 | 312 | No hit | No description |
Pfam | PF00010 | 3.0E-12 | 262 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-16 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MAAEKMPDST KPGMTRSTSY LDSIYGKGSL ELVWENGQLH VQQGGSSSTS SVVTRMTPSC 60 EGSFNAKSAR LSSLYSLMDF PVQRDSALDN SQPNSHQSND QNSGKFAKAA NSSSKGLDRS 120 LVINSPKGSP GRQKNPLNSD TSNMVPRSEE TTPPDEQSEA VGHDSIHGSR GQYFNQTSSS 180 ARHRAKGKAH DTKQKYCDEG LLESSSLCSI GASNNRNVCS RTHDDIDDST YLSNNDEEPE 240 DVVKEKPAWE GTGVKRSRNA EVHNLCERKR RDKINKRMRI LKELIPNCNK TDKASMLDDA 300 IEYLKTLKLQ LQMMSMGAGF CMPFMMLPNA AHHMMNTPHL HQLMGLGMGF RPGTAMPCSL 360 PQFPITPLHG ITDNRVHMFG FPNQVPPMPI SHAPFIPMLG NPSTQPTPLA TSTNINLAEN 420 PASSQLTTLM ASSPKNLFIS GQAEYATKQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 271 | ERKRRD |
2 | 267 | 272 | RKRRDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G138800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095854 | 0.0 | BT095854.1 Soybean clone JCVI-FLGm-15A10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589091.1 | 0.0 | transcription factor PIL1 isoform X1 | ||||
TrEMBL | K7LJB0 | 0.0 | K7LJB0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G27910.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46970.1 | 5e-38 | phytochrome interacting factor 3-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G138800.2.p |
Entrez Gene | 100818543 |