PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 385aa MW: 42031.7 Da PI: 8.5882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G093100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.4e-13	312	357	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq Glyma.10G093100.1.p 312 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 357 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	306	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-16	309	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.11E-12	310	359	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-15	311	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-10	312	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDSHIHHHHH QGYQQHQNQP SSGLLRFRSA PSSLLSNLTP FVSEDFGSSS FRELQGNNNK 60 GCSKDLSSMN SHKGVYGGGL PPHYPRHRGS SSSAATSSSA MEGSFGLVGS MGMNHETPQN 120 GLGSSLLRHS TSPAGLFSNN NINFQNGFAT MKGVGNYGGV NGSNGELSPC INGLKNQVSF 180 SPRNASSLGM LSQISEIGNE DIEATSPDDD TRHEGNDTQQ YGPGFPYGSW NDTPQLSENL 240 SGLKRGRSSN EKMFSDEIQN GELGNQVNML SHHLSLPKTS AEMITMKKLL QFPDSVPCKI 300 RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQKQF 360 KTLSEKRAKC ECTSMQKADT NQIA*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDSHIHHHHH QGYQQHQNQP SSGLLRFRSA PSSLLSNLTP FVSEDFGSSS FRELQGNNNK  60
GCSKDLSSMN SHKGVYGGGL PPHYPRHRGS SSSAATSSSA MEGSFGLVGS MGMNHETPQN  120
GLGSSLLRHS TSPAGLFSNN NINFQNGFAT MKGVGNYGGV NGSNGELSPC INGLKNQVSF  180
SPRNASSLGM LSQISEIGNE DIEATSPDDD TRHEGNDTQQ YGPGFPYGSW NDTPQLSENL  240
SGLKRGRSSN EKMFSDEIQN GELGNQVNML SHHLSLPKTS AEMITMKKLL QFPDSVPCKI  300
RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV EYIKDLQKQF  360
KTLSEKRAKC ECTSMQKADT NQIA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.29664	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G093100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-102	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003537191.1	0.0	transcription factor bHLH130
Swissprot	Q66GR3	2e-88	BH130_ARATH; Transcription factor bHLH130
TrEMBL	I1L9V1	0.0	I1L9V1_SOYBN; Uncharacterized protein
STRING	GLYMA10G12150.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53
Representative plant	OGRP511	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-87	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G093100.1.p
Entrez Gene	100810203

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]