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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.10G078200.1.p |
| Common Name | GLYMA_10G078200, LOC100809283 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
E2F/DP |
| Protein Properties |
Length: 467aa MW: 50981.3 Da PI: 4.9985 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.10G078200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 83 | 2.5e-26 | 148 | 213 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++l++++e gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg
Glyma.10G078200.1.p 148 RYDSSLGLLTKKFINLVKHAEGGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIHWKG 213
6899******************************...99..****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MSSAAGAPDR RASPPRVAAG APTRPPLKRH LAFITKPPFA PPDEYHSFSS IGSRRAADEA 60
VVVRSPYIMK RKSGMNDSEG ESLAQKWSNS PGYTNVSNVT NNSPFKTPVS AKGGRTQKAK 120
ASKGRSCPPT PISNAGSPSP LTPASSCRYD SSLGLLTKKF INLVKHAEGG ILDLNKAAET 180
LEVQKRRIYD ITNVLEGIGL IEKKLKNRIH WKGIESATSG DVDGDISLLK AEVEKLSLEE 240
QGIDDQIREM QERLRNLSEN ENNQKCLFVT EEDIKDLPCF QNETLIAIKA PHGTTLEVPD 300
PEEAVDYPQR RYRIILRSTM GPIDVYLISQ FEEKFEEVNG AELPMIPLAS SSGSNEQLMT 360
EIVTAECSGK ELEPQTQLSS HAFSDASQEF AGGMMKIVPS DVDNDADYWL LSDADISITD 420
MWRTDSSVDW NGVDMLHPDF GVISRPQTPS SGFAEVPSTA ANSIQK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
