PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G065100.1.p
Common NameGLYMA_10G065100, LOC100805176
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 498aa    MW: 54129.5 Da    PI: 6.111
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G065100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.91.5e-19117203186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  + +L+ea++e+ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle
  Glyma.10G065100.1.p 117 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMSSG-CISTSHWPWFKQLE 203
                          5*************************************666677899*************************9.99999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-20115205No hitNo description
Gene3DG3DSA:3.40.1160.101.4E-68250490IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.691256491IPR015963Uridylate kinase, bacteria
SuperFamilySSF536335.37E-57257490IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042549.12E-106259491No hitNo description
PfamPF006963.1E-26260470IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASCDDDDDF SLLRDDTHHH LHQPYAPHHH HFSPSAVSVA SASSVPPKPA AAADDDAEDF  60
SNPFDEDDDG EKRKERDEIG EGAASYGFNN KRSKTTAPSN GVGAVSGGAE YRKDREEWSD  120
TAIVCLLEAY TEKFTQLNRG NLRGRDWEEV AAVVSERCEN QSKSVEQCKN KVDNLKKRYK  180
LERHRMSSGC ISTSHWPWFK QLEQIVGNSL PAKFSDEDKA VISAGTSPRQ SKRYGVATPS  240
TGGPANSMKS KALSNSRWRR VVLKISGAAL TGSDTCNIDP KVAMLVSREV AIASRLGVEV  300
AIVVGGRNFF SGEAWVNVTG LERCTAYQVG MMATVMNSIL LQSTLEKMGV QTRVQTSVAM  360
QEFAEPYNRQ RAIRHLEKGR VVIFGGIGFG AGTPLFSTDI AAALRASELN AEAVLKGTNV  420
DGVYDCNSRD NNFTFEHISF RELGSRGVTS MDMSALTFCE ENAIPVVVFN LLEPGNISKA  480
LCGEQVGTLI DQTGAIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-6124449036279Uridylate kinase
3nwy_B1e-6124449036279Uridylate kinase
3nwy_C1e-6124449036279Uridylate kinase
3nwy_D1e-6124449036279Uridylate kinase
3nwy_E1e-6124449036279Uridylate kinase
3nwy_F1e-6124449036279Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.449570.0cotyledon
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G065100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-102AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535275.10.0uncharacterized protein LOC100805176
RefseqXP_028185941.10.0uncharacterized protein LOC114372534
TrEMBLA0A445IIP90.0A0A445IIP9_GLYSO; Uridylate kinase isoform A
TrEMBLI1L9660.0I1L966_SOYBN; Uncharacterized protein
STRINGGLYMA10G07490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein