PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G057800.1.p
Common NameGLYMA_10G057800, LOC100777720
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 465aa    MW: 52628.9 Da    PI: 6.8425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G057800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07339386448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E ++lv+++ ++G g+W+ I r +      Rt+ +++++w+++l
  Glyma.10G057800.1.p 339 WTLPEVLKLVEGISEYGVGRWTDIKRFLFsstSYRTPIDLRDKWRNLL 386
                          9*******************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-11330393IPR009057Homeodomain-like
PROSITE profilePS5129413.828330390IPR017930Myb domain
SMARTSM007173.4E-8335388IPR001005SANT/Myb domain
CDDcd116602.30E-16337387No hitNo description
SuperFamilySSF466898.97E-16338406IPR009057Homeodomain-like
PfamPF139215.6E-5339397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDREEYLGKC SNMKCQRVDE SYVHALQDEV MEVEHLLAEP RNDHASLDGS LDSHTTLNGK  60
DDLELEALDG LLDDVEINDL EGTVGFPGGT CEEYFLDFGF ADKFEEVLGS GPFVGSLLQN  120
SSSESHSSGL SGSSIVDGVL ESTEVPIAQS ECKNDSLDET ITYESHGAFR NNPSQPSKVN  180
CRYNISLDIQ HLQDLDNNRH LAGGILTCKK EKGPVEKGQP AALREKRFRK PTQRYIEEFS  240
NSRSKEKAPT AGTKTKYLSD SSCDDVLHIR IKAFKKSPSE KSSIENRDVM LPELQVHKGR  300
PKKEKLEYDN ESFPLESEDE WLTSKRSRRK DRRKHQKMWT LPEVLKLVEG ISEYGVGRWT  360
DIKRFLFSST SYRTPIDLRD KWRNLLRASS AQKSTREAEQ NDELALRPLP FNVVHRVQEL  420
AKIHPYPRER GSKKLRVSQA GSSVIAKDSP PLSLSKRNVR RKFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324332KRSRRKDRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.62220.0cotyledon| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G057800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982550.0BT098255.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588796.10.0uncharacterized protein LOC100777720 isoform X1
TrEMBLI1L9000.0I1L900_SOYBN; Uncharacterized protein
STRINGGLYMA10G06560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.29e-23TRF-like 6