PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 146aa MW: 16249.2 Da PI: 5.9865

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G020100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	170.4	2.1e-53	33	128	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +eqdr+lPianv+rimk++lP nakisk+aket+qe vsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy eplk yl kyr Glyma.10G020100.1.p 33 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQESVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYSEPLKRYLYKYR 122 89************************************************************************************** PP NF-YB 92 elegek 97 e+ege+ Glyma.10G020100.1.p 123 EMEGER 128 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-51	29	136	IPR009072	Histone-fold
SuperFamily	SSF47113	6.45E-40	35	140	IPR009072	Histone-fold
Pfam	PF00808	7.1E-27	38	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.2E-19	66	84	No hit	No description
PRINTS	PR00615	3.2E-19	85	103	No hit	No description
PRINTS	PR00615	3.2E-19	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MGDNIGKVLD REGFKYNFTA SASGTSAQDG VIKEQDRLLP IANVGRIMKQ ILPPNAKISK 60 EAKETMQESV SEFISFVTGE ASDKCHKEKR KTVNGDDICW ALATLGFDDY SEPLKRYLYK 120 YREMEGERAN QNKGSNGYEN NIANI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-43	32	123	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-43	32	123	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.403	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G020100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-115	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536891.1	1e-105	nuclear transcription factor Y subunit B-5
Refseq	XP_028183993.1	1e-105	nuclear transcription factor Y subunit B-5-like
Swissprot	O82248	6e-59	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	I1L7X0	1e-104	I1L7X0_SOYBN; Uncharacterized protein
STRING	GLYMA10G02480.1	1e-105	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	3e-61	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Glyma.10G020100.1.p
Entrez Gene	100796514

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]