PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G013300.1.p | ||||||||
Common Name | bZIP59, GLYMA_10G013300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 153aa MW: 16834.1 Da PI: 5.0661 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.1 | 1.6e-12 | 25 | 76 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++ +r+++NRe+ArrsR +K++ +e L + + L++eN +L++ ++ ++ + Glyma.10G013300.1.p 25 RKRKRMESNRESARRSRMKKQKLLEDLSDVASRLQGENVRLAQSIKAKEEAY 76 6789**************************************9999877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.1E-11 | 21 | 85 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.2E-9 | 23 | 74 | No hit | No description |
PROSITE profile | PS50217 | 9.887 | 23 | 70 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.1E-9 | 25 | 76 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.29E-9 | 25 | 75 | No hit | No description |
CDD | cd14702 | 1.49E-16 | 26 | 76 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 28 | 43 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MASIPRPASS GSSEGGGDPA AMDERKRKRM ESNRESARRS RMKKQKLLED LSDVASRLQG 60 ENVRLAQSIK AKEEAYVEIE AANDILRAQT MELADRLRFL NSILEIADEV GGGGESFEIP 120 QIPDPLFMPW QIPHPMMASP DMLLHGNQGL FA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 45 | RKRKRMESNRESARRSRMKKQK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4404 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In developing seeds, accumulates in embryo cotyledons during late maturation, from the torpedo to the green cotyledon stages. Also present in endosperm. {ECO:0000269|PubMed:19531597}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing seeds. {ECO:0000269|PubMed:19531597}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA to the C-box-like motif (5'-TGCTGACGTCA-3'), ABRE elements, G-box-like motif (5'-CCACGTGGCC-3'), DOF (5'-AAAG-3'), I-box (5'-GATAA-3'), BS1 (5'-AGCGGG-3'), MY3 (5'-CGACG-3'), 5'-CAGTGCGC-3' and 5'-ACTCAT-3' sequence in target gene promoters (PubMed:15047879, PubMed:16810321, PubMed:19531597, PubMed:21278122, PubMed:25108460). DNA-binding and subsequent transcription activation is triggered by heterodimerization with other bZIP proteins (e.g. BZIP1, BZIP10 and BZIP25) (PubMed:16810321, PubMed:19531597, PubMed:21278122). Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879, PubMed:16810321). Transcriptional activator of seed maturation (MAT) genes (e.g. AT2S2), including seed storage protein (SSP) and late embryogenesis abundant (LEA) genes (PubMed:19531597). Activated by low energy stress both by transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response, especially when heterodimerized with BZIP1, by triggering accumulation of sepcific proteins including ASN1 and POX1/PRODH1 (PubMed:21278122). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:25108460}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G013300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hypoosmolarity (PubMed:15047879, PubMed:16810321). Accumulates during dark-induced starvation (PubMed:21278122). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:16810321, ECO:0000269|PubMed:21278122}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097364 | 0.0 | BT097364.1 Soybean clone JCVI-FLGm-21N16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237011.1 | 1e-107 | bZIP transcription factor bZIP59 | ||||
Refseq | XP_028185656.1 | 1e-107 | bZIP transcription factor 53-like | ||||
Swissprot | Q9LZP8 | 6e-37 | BZP53_ARATH; bZIP transcription factor 53 | ||||
TrEMBL | A0A445IGH4 | 1e-105 | A0A445IGH4_GLYSO; BZIP transcription factor 53 | ||||
TrEMBL | Q0GPH7 | 1e-105 | Q0GPH7_SOYBN; BZIP transcription factor bZIP59 | ||||
STRING | GLYMA10G01640.1 | 1e-106 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4202 | 34 | 60 | Representative plant | OGRP551 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 2e-39 | basic region/leucine zipper motif 53 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G013300.1.p |
Entrez Gene | 778130 |