 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.10G012500.1.p |
| Common Name | GLYMA_10G012500 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
GRAS |
| Protein Properties |
Length: 452aa MW: 51852.4 Da PI: 8.472 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.10G012500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 197.6 | 7.5e-61 | 143 | 414 | 35 | 321 |
GRAS 35 gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
+ ++qR++++f++AL++r+ r +++ k l+ ++ + +++++ + ++ P+ ++ ++ qaI+e v++++++H i +di+ G+Q
Glyma.10G012500.1.p 143 DGAVQRVVFHFAQALQERIRR--ETIGK-LTLNKLK---MDTNM--AVACHQKIPFNQMMQFSGVQAIVENVASKTKIHLINLDIGCGVQ 224
6789*****************..33333.3333332...33332..23467889************************************ PP
GRAS 125 WpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
+aL+qaLa+R+ e+ l+iT++g + k+e e+tg+rL +fAe+l++pf ++v+ ++++ ++++e++ ++ +Ea+aV + ++l ++
Glyma.10G012500.1.p 225 CMALMQALAERQeEQVEILKITAIGL---QGKTEPEKTGKRLVSFAESLNLPFLYKVVFVTSIIEIKVEQFGIEDNEAVAVYSPYMLRTM 311
************556679********...5899********************************************************* PP
GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
+++s sle+ +++++++++P ++++ e ea+h s++F++rf+eal +ysa+ d++e+ + ++ e r+ +E l++ i+n+va+e
Glyma.10G012500.1.p 312 VSDSDSLEH----LIRVMRKIRPSIMIILELEAKHHSPTFVNRFIEALFFYSAFSDCIETCMKQDYECRMRIEGI-LSEGIRNIVAMEDG 396
*99999998....************************************************************99.************** PP
GRAS 304 errerhetlekWrerlee 321
er r+ + Wr+ + +
Glyma.10G012500.1.p 397 ERMVRNVKIDVWRRFFAR 414
*************99876 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MELLGGINTF PTSSEKNQKQ QYDFNFDPLM LEEFNFVLVH QPKQSLQEIK EPKKNEQVLP 60
SSIASLELLS NYGSRFKRLG KQNIIDSNVQ TCVSTPQKLS TEEIIRLAVA RYIQHSTQRH 120
EDVCIPMHPY RFGLGVLSKE LSDGAVQRVV FHFAQALQER IRRETIGKLT LNKLKMDTNM 180
AVACHQKIPF NQMMQFSGVQ AIVENVASKT KIHLINLDIG CGVQCMALMQ ALAERQEEQV 240
EILKITAIGL QGKTEPEKTG KRLVSFAESL NLPFLYKVVF VTSIIEIKVE QFGIEDNEAV 300
AVYSPYMLRT MVSDSDSLEH LIRVMRKIRP SIMIILELEA KHHSPTFVNR FIEALFFYSA 360
FSDCIETCMK QDYECRMRIE GILSEGIRNI VAMEDGERMV RNVKIDVWRR FFARYRMFAC 420
GNFCTVDRNR KCLIFGLKGT PIHSISVWKF L*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
