PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G248200.2.p
Common NameGLYMA_09G248200, LOC100526744
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 705aa    MW: 76968.7 Da    PI: 6.8158
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G248200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-11265321155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Glyma.09G248200.2.p 265 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 321
                          57*******************4444.2455535555.779999**************98 PP
2AP246.31.1e-14364415155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.09G248200.2.p 364 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 415
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-14265331IPR016177DNA-binding domain
PfamPF008471.2E-8265321IPR001471AP2/ERF domain
CDDcd000181.93E-19265331No hitNo description
PROSITE profilePS5103217.319266329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-12266330IPR001471AP2/ERF domain
SMARTSM003802.6E-22266335IPR001471AP2/ERF domain
PRINTSPR003672.9E-6267278IPR001471AP2/ERF domain
PfamPF008473.7E-10364415IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18364425IPR016177DNA-binding domain
CDDcd000184.52E-25364425No hitNo description
PROSITE profilePS5103219.058365423IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18365424IPR001471AP2/ERF domain
SMARTSM003807.0E-34365429IPR001471AP2/ERF domain
PRINTSPR003672.9E-6405425IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MGSMNLLGFS LSPHEEHPSS QDHSQTTPSR FSFNPDGSIS STDVAGGCFD LTSDSTPHLL  60
NLPSYGIYEA FHRNNSINTT QDWKENYNSQ NLLLGTSCNK QNMNQNQQQQ PKLENFLGGH  120
SFGEHEQTYG GNSASTDYMF PAQPVSAGGG GSGGGSNNNN NSNSIGLSMI KTWLRNQPPN  180
SENINNNNES GGNIRSSVQQ TLSLSMSTGS QSSTSLPLLT ASVDNGESSS DNKQPNTSAA  240
LDSTQTGAIE TAPRKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQG  300
GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SHYEKELEEM KHMTRQEYVA SLRRKSSGFS  360
RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDVAA IKFRGLSAVT  420
NFDMSRYDVK SILESTTLPI GGAAKRLKDM EQVELSVDNG HRADQVDHSI IMSSHLTQGI  480
NNNYAGGGTA THHNWHNAHA FHQPQPCTTM HYPYGQRINW CKQEQQDNSD APHSLSYSDI  540
HQLQLGNNGT HNFFHTNSGL HPMLSMDSAS IDNSSSSNSV VYDGYGGGGG YNVMPMGTTT  600
AVVASDGDQN PRSNHGFGDN EIKALGYESV YGSATDSYHA HARNLYYLTQ QQSSSVDTVK  660
ASAYDQGSAC NTWVPTAIPT HAPRSTTSMA LCHGATTPFS LLHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278260.0somatic embryo| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G248200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758560.0HM775856.1 Glycine max babyboom 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586645.10.0babyboom 1 isoform X1
TrEMBLA0A0B2QKY20.0A0A0B2QKY2_GLYSO; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0R0ID310.0A0A0R0ID31_SOYBN; Uncharacterized protein
STRINGGLYMA09G38370.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-129AP2 family protein
Publications ? help Back to Top
  1. El Ouakfaoui S, et al.
    Control of somatic embryogenesis and embryo development by AP2 transcription factors.
    Plant Mol. Biol., 2010. 74(4-5): p. 313-26
    [PMID:20798978]