PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G245300.1.p
Common NameGLYMA_09G245300, LOC102665993
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 323aa    MW: 36039.6 Da    PI: 10.2142
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G245300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.74.1e-2035109170
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekk 70 
                          +Wt +e+ aLi+a+r+++ +l+r++lk+++W+ev++ +      + +  ++p+qC++k+e+l+kry+ + ++ ++
  Glyma.09G245300.1.p  35 CWTPEETSALIDAYRDKWYSLGRTNLKATHWQEVADSVtaqcpNASPTAKTPVQCRHKMEKLRKRYRTEIQRLRN 109
                          8******************************************9***********************99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-1934135No hitNo description
PROSITE profilePS500906.2953697IPR017877Myb-like domain
SMARTSM005951.3E-743140IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MASPSSPTDS NPPSALPLPI PPPPSTSSRR LPPPCWTPEE TSALIDAYRD KWYSLGRTNL  60
KATHWQEVAD SVTAQCPNAS PTAKTPVQCR HKMEKLRKRY RTEIQRLRNL PLPRLNNAST  120
NSPSSWLHFK SMDSMEKGPN HKPHADNNLN INNNFHDDDV DDDDLYEEFK NAPGSNTRSL  180
NKLYKNNNGF NSAGSGSGSG FRIRIPAGVP QQQHHTASSN KIFNSHPPPG MGPRGGGVKR  240
ERERDAVAEM VGAIKVLRDG FVRMEQMKME MAREIESMRM EMEMKRTEMI LDSQQRIVEA  300
FARAVSQKRT KGKSTPSPSS QP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.70380.0cotyledon| hypocotyl| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G245300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-125AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588330.10.0trihelix transcription factor ASIL2
RefseqXP_028181564.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A445J5K50.0A0A445J5K5_GLYSO; Protein FIP2
TrEMBLI1L6490.0I1L649_SOYBN; Uncharacterized protein
STRINGGLYMA09G38050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-42Trihelix family protein