PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G239100.1.p
Common NameGLYMA_09G239100, LOC100796852
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 93aa    MW: 10463.8 Da    PI: 10.1051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G239100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.3e-0822581854
                         HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         +  ++Lr+l+P+ + + +s K+s + +L+++++YI+sL
  Glyma.09G239100.1.p 22 ELVSKLRQLVPEiR-NRRSDKVSASKVLQETCNYIRSL 58
                         56689*******77.89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.185458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-91874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-91877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-52258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQHS GSTRISDDQI IELVSKLRQL VPEIRNRRSD KVSASKVLQE TCNYIRSLHR  60
EVSDLSERLS QLLTTIDADS AEAGIIRSLL NQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12737RQLVPEIRNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37901e-147root
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G239100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948781e-145BT094878.1 Soybean clone JCVI-FLGm-6I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534454.13e-58transcription factor PRE6
RefseqXP_028180391.13e-58transcription factor PRE6-like
SwissprotQ9LJX19e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0R0ICN48e-57A0A0R0ICN4_SOYBN; Uncharacterized protein
TrEMBLA0A371E3308e-57A0A371E330_MUCPR; Transcription factor PRE5
TrEMBLA0A445J5C58e-57A0A445J5C5_GLYSO; Transcription factor PRE5
STRINGGLYMA09G37370.11e-57(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-43bHLH family protein