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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.09G199800.1.p |
Common Name | GLYMA_09G199800, LOC100775390 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
AP2 |
Protein Properties |
Length: 513aa MW: 56063.4 Da PI: 7.1974 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.09G199800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 44.5 | 3.7e-14 | 222 | 281 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+ ++ a++k++g
Glyma.09G199800.1.p 222 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARSYDLAALKYWG 281
57*******************666664478446*************************98 PP
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2 | AP2 | 50.5 | 5.1e-16 | 324 | 375 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Glyma.09G199800.1.p 324 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 375
57****************988532...5*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 513 aa
Download sequence Send
to blast |
MARASTNWLS FSLSPMDMLR TPEPQFVQYD AASDTSSHHY YLDNLYTNGW GNGSLKFEQN 60 LNHSDVSFVQ SSSQSVSHAP PKLEDFLGDS SAVMRYSDSQ TETQDSSLTH IYDHHHHHHH 120 GSSAYFGGDH QDLKAITGFQ AFSTNSGSEV DDSASIGKAQ GSEFGTHSIE SSVNEFAAFS 180 GGTNTGGTLS LAVAQSSEKA VAAAAESDRS KKVVDTFGQR TSIYRGVTRH RWTGRYEAHL 240 WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR SYDLAALKYW GPTATTNFPV SNYSKEVEEM 300 KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE 360 EAAEAYDIAA IKFRGANAVT NFEMNRYDVE AIMKSSLPVG GAAKRLKLSL ESEQKALPVS 420 SSSSSSQQQN PQCGNVSASI NFSSIHQPIA SIPCGIPFDS TTAYYHHNLF QHFHPTNAGT 480 AASAVTSANA NALTALPPTA AAEFFIWPHQ SY*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers. BMC Res Notes, 2015. 8: p. 556 [PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]
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