PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G170400.1.p
Common Namegbp, GLYMA_09G170400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31234.9 Da    PI: 10.2911
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G170400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind360.34e-11012821301
            GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd..........maflqrdkalaernkalverd 78 
                          md d+  + rn+gyyepa+s+k++lglqlmss++e+     r++ + l+++++a+++rd          m++ +rd+++++        +
  Glyma.09G170400.1.p   1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LAGTNGAFHHRDiggmpqatypMEY-MRDAWISQ--------R 80 
                          888888888*************************988766355555.9************************.9*******........7 PP

            GAGA_bind  79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
                          +k++++++++++        ++ +++t+s++++q++     + +  +      +e++p+eea+  +ke+ ++kkrq++k+pk++kakk+k
  Glyma.09G170400.1.p  81 DKYMNMIPTNHN--------YGGIPETSSAHQIQMI-----QAPELP------KEEKPVEEAPVIEKENGTRKKRQSSKVPKSPKAKKPK 151
                          89******9997........999************3.....333223......3458999999999************************ PP

            GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
                          + ++++k++++++   +r++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCYkWG+GGWqSaCCtt +SvyPLP+stkrrgaRiagr
  Glyma.09G170400.1.p 152 RGPRAPKDESAPAV--QRARIPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYKWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGR 239
                          *9999988888887..79************************************************************************ PP

            GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          KmS gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvtir
  Glyma.09G170400.1.p 240 KMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 282
                          ******************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.7E-1151282IPR010409GAGA-binding transcriptional activator
SMARTSM012261.1E-1681282IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLAGT NGAFHHRDIG  60
GMPQATYPME YMRDAWISQR DKYMNMIPTN HNYGGIPETS SAHQIQMIQA PELPKEEKPV  120
EEAPVIEKEN GTRKKRQSSK VPKSPKAKKP KRGPRAPKDE SAPAVQRARI PKKTTEIVIN  180
GIDMDISSIP IPVCSCTGAP QQCYKWGSGG WQSACCTTGM SVYPLPMSTK RRGARIAGRK  240
MSIGAFKKVL EKLAAEGYNF SNPIDLRTYW AKHGTNKFVT IR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.608590.0hypocotyl| leaf| root| seed coat| somatic embryo| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO205307150.0
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G170400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5024310.0AF502431.1 Glycine max GAGA-binding protein (gbp) mRNA, complete cds.
GenBankBT0933840.0BT093384.1 Soybean clone JCVI-FLGm-17A2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236213.10.0GAGA-binding protein
RefseqXP_006586719.10.0GAGA-binding protein isoform X1
RefseqXP_006586720.10.0GAGA-binding protein isoform X1
RefseqXP_006586721.10.0GAGA-binding protein isoform X1
RefseqXP_028181775.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028181776.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028181777.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_028181778.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD02e-94BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A0B2SA820.0A0A0B2SA82_GLYSO; Protein BASIC PENTACYSTEINE1
TrEMBLQ8LKV10.0Q8LKV1_SOYBN; GAGA-binding protein
STRINGGLYMA09G30050.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-88basic pentacysteine 2
Publications ? help Back to Top
  1. Sangwan I,O'Brian MR
    Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA.
    Plant Physiol., 2002. 129(4): p. 1788-94
    [PMID:12177492]