PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G148000.1.p
Common NameLOC100792089
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 427aa    MW: 46206 Da    PI: 7.4025
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G148000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-09102123426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C+++ + G C+yG+rCkF H+
  Glyma.09G148000.1.p 102 KVCNYWIQ-GSCSYGERCKFLHS 123
                          68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.6481844IPR000571Zinc finger, CCCH-type
SMARTSM003560.232043IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.20299125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7100123IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6100124IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6102123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7102121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.8E-49122416IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.2E-6129168IPR001680WD40 repeat
SuperFamilySSF509788.15E-49129177IPR017986WD40-repeat-containing domain
PfamPF004009.9E-5132168IPR001680WD40 repeat
PROSITE profilePS5008213.85136168IPR001680WD40 repeat
PROSITE profilePS5029421.779136338IPR017986WD40-repeat-containing domain
PRINTSPR003201.9E-6155169IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780155169IPR019775WD40 repeat, conserved site
SMARTSM003203.4208245IPR001680WD40 repeat
SuperFamilySSF509788.15E-49215417IPR017986WD40-repeat-containing domain
SMARTSM003204.5E-4252289IPR001680WD40 repeat
PfamPF004000.0019256289IPR001680WD40 repeat
PROSITE profilePS5008213.082259298IPR001680WD40 repeat
PROSITE patternPS006780276290IPR019775WD40 repeat, conserved site
PRINTSPR003201.9E-6276290IPR020472G-protein beta WD-40 repeat
SMARTSM003201.6E-4292329IPR001680WD40 repeat
PfamPF004000.0014294328IPR001680WD40 repeat
PRINTSPR003201.9E-6316330IPR020472G-protein beta WD-40 repeat
SMARTSM003201.3333376IPR001680WD40 repeat
SMARTSM003202.1379416IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDVDGGNKRV YNRLGGDAKH QKVCYHWQAG KCNRYPCPFL HSESPANSHH ANGTSSKRTY  60
DNSGFSGPRR SPNFNNTWGR GGGRGGGGGG GAGRGVVVKA EKVCNYWIQG SCSYGERCKF  120
LHSWSVGDGF SLLTQLEGHQ KAVSAIAFPS GSDKLYTGST DETARIWDCQ CGKCVGVINL  180
GGEVGCMISE GPWVFVGIPN FVKAWNTQNL SELSLNGPVG QVYALVVNND MLFAGTQDGS  240
ILAWKFNVAT NCFEPAASLK GHSRGVVSLV VGANRLYSGS MDNTIKVWNL ETLQCLQTLT  300
EHTSVVMSVL CWDQFLLSCS LDKTVKVWYA TESGNLEVTY SHNEENGILT LCGMHDSQGK  360
PILLCACNDN TVHLYDLPSF AERGKILTKQ EVRAIQIGPN GIFFTGDGTG EVRVWNWIAE  420
ATTTTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-251244165323Tako8
6g6n_A3e-251244165323Tako8
6g6n_B3e-251244165323Tako8
6g6n_C3e-251244165323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18189GGRGGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.617210.0cotyledon| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G148000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-57AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534022.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0R0I8M70.0A0A0R0I8M7_SOYBN; Uncharacterized protein
STRINGGLYMA09G27300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1