PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G143700.1.p

Common Name

GLYMA_09G143700, LOC100820113

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 777aa MW: 85098.7 Da PI: 5.552

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G143700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.9	6.5e-22	89	144	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r++L+k+lgL+ +qVk+WFqNrR+++k Glyma.09G143700.1.p 89 KKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMK 144 79999************************************************999 PP
2	START	174.5	6.7e-55	301	523	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 la+ a++el+k+a+ + +W kss e +n de+ + f++ + + +ea r +gvv++ + ve+l+d+ +W e++ + Glyma.09G143700.1.p 301 LALNAMNELIKMAQPDTSLWIKSSdgrnEVLNHDEYARLFSPYVGskpagYVTEATRGTGVVPASSLGIVETLMDVD-RWAEMFSsmiaS 389 6789******************9999999*****99666999*************************.9*999999 PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a+tlev+ssg galq+m ae q+lsplvp R f+Ry++q+g+g+w++vdvSvd +++++s++++ +++lpSg++i++++ng Glyma.09G143700.1.p 390 AATLEVLSSGmgesrsGALQVMLAEVQLLSPLVPaRSLSFLRYSKQHGEGVWAVVDVSVDIGRNVTNSHPLMSCRRLPSGCVIQDMPNGF 479 **************************************************************************************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 sk+twveh ++++++h+l+r+lv+sg+ +ga++w atl rqc Glyma.09G143700.1.p 480 SKITWVEHSQYDESVVHQLYRPLVSSGIGFGAQRWIATLLRQCD 523 ***************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.68E-21	69	146	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-23	74	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.961	86	146	IPR001356	Homeobox domain
SMART	SM00389	2.5E-19	88	150	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-19	89	144	IPR001356	Homeobox domain
CDD	cd00086	4.53E-18	93	146	No hit	No description
PROSITE pattern	PS00027	0	121	144	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.133	291	527	IPR002913	START domain
SuperFamily	SSF55961	1.18E-33	293	524	No hit	No description
CDD	cd08875	1.08E-109	295	522	No hit	No description
SMART	SM00234	3.3E-38	300	524	IPR002913	START domain
Pfam	PF01852	2.5E-46	301	523	IPR002913	START domain
SuperFamily	SSF55961	2.89E-17	543	745	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence Send to blast
MASVYTVDPH LFSSPFDISK QNPSTLNLAA QRRMEGHSEM GQIGESFDTS NLLGRLRDDE 60 YESRSGSDNF DGGSGDDQDA GDDQPHKKKK KYHRHTPQQI QELEAFFKEC PHPDEKQRTD 120 LSKRLGLENK QVKFWFQNRR TQMKTQLERH ENMILRQEND KLRAENSVMK DALANPTCNN 180 CGGPAIPGQI SLEEHQTRME NARLKDELNR ICALANKFLG RPLSPLASPM ALPPSNSGLE 240 LAIGRNGIGG PSNFGMSLPM GFDVGDGVMG SSPGMSSMGA RSPMGMMGNE IQLERSMLLD 300 LALNAMNELI KMAQPDTSLW IKSSDGRNEV LNHDEYARLF SPYVGSKPAG YVTEATRGTG 360 VVPASSLGIV ETLMDVDRWA EMFSSMIASA ATLEVLSSGM GESRSGALQV MLAEVQLLSP 420 LVPARSLSFL RYSKQHGEGV WAVVDVSVDI GRNVTNSHPL MSCRRLPSGC VIQDMPNGFS 480 KITWVEHSQY DESVVHQLYR PLVSSGIGFG AQRWIATLLR QCDCLAILMS QIPSEDPTVI 540 SLEGKKNMLK LAQRMTEYFC SGICASSVRK WEILNIGNLA DDMRIMARKI NMDDPTEAPG 600 IVLSASTSVW MPVSRQRVFD FLRDENLRGE WDMLSKDGPM KEMLHIAKGQ DRGNCVSILH 660 SANSECNVLY LQESWTDASG SLVVYSPINM QALNMVMNCG DSSFVALRPS GFAILPDGAS 720 NNGDGSDGGG SCLLTVGLQM LPNGDQSTKF TMESVVTVNS LISNTIQKVK DALGVA*

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence Send to blast

MASVYTVDPH LFSSPFDISK QNPSTLNLAA QRRMEGHSEM GQIGESFDTS NLLGRLRDDE  60
YESRSGSDNF DGGSGDDQDA GDDQPHKKKK KYHRHTPQQI QELEAFFKEC PHPDEKQRTD  120
LSKRLGLENK QVKFWFQNRR TQMKTQLERH ENMILRQEND KLRAENSVMK DALANPTCNN  180
CGGPAIPGQI SLEEHQTRME NARLKDELNR ICALANKFLG RPLSPLASPM ALPPSNSGLE  240
LAIGRNGIGG PSNFGMSLPM GFDVGDGVMG SSPGMSSMGA RSPMGMMGNE IQLERSMLLD  300
LALNAMNELI KMAQPDTSLW IKSSDGRNEV LNHDEYARLF SPYVGSKPAG YVTEATRGTG  360
VVPASSLGIV ETLMDVDRWA EMFSSMIASA ATLEVLSSGM GESRSGALQV MLAEVQLLSP  420
LVPARSLSFL RYSKQHGEGV WAVVDVSVDI GRNVTNSHPL MSCRRLPSGC VIQDMPNGFS  480
KITWVEHSQY DESVVHQLYR PLVSSGIGFG AQRWIATLLR QCDCLAILMS QIPSEDPTVI  540
SLEGKKNMLK LAQRMTEYFC SGICASSVRK WEILNIGNLA DDMRIMARKI NMDDPTEAPG  600
IVLSASTSVW MPVSRQRVFD FLRDENLRGE WDMLSKDGPM KEMLHIAKGQ DRGNCVSILH  660
SANSECNVLY LQESWTDASG SLVVYSPINM QALNMVMNCG DSSFVALRPS GFAILPDGAS  720
NNGDGSDGGG SCLLTVGLQM LPNGDQSTKF TMESVVTVNS LISNTIQKVK DALGVA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G143700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006587344.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_028180201.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	K7LDX2	0.0	K7LDX2_SOYBN; Uncharacterized protein
STRING	GLYMA09G26600.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G143700.1.p
Entrez Gene	100820113

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]