PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G098300.2.p
Common NameGLYMA_09G098300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 347aa    MW: 37967.1 Da    PI: 7.1791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G098300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12274319555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Glyma.09G098300.2.p 274 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 319
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-16267325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-12267323No hitNo description
PROSITE profilePS5088817.39269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15271323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MQPCSREMQG LNSLLNSSSQ ISLQDLHNHT TNQIQNSHMN HQHHHQQQQQ HQQQQHQLAH  60
FDSTSHDDFL EQMLSSCSWT DLNHNKPLLW DPNTPNDIKP PDETTPSNNN DDATANVVFP  120
SFDEHSTLAS KFRNHQISPN NAPKNAAAAA FMLQHQLLRD SGLLNMPLSL PGNDVVDASS  180
FKSPNPGGEA SVQALYNGFA GSLHGAGQSS NQTQHFQNPQ GSSNPMQGQN FGAAPAGGGG  240
ATNQAPGSGA AAGGAPAQPR QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN  300
KTDKASMLDE IIDYVKFLQL QVKVRIPRFS LVLAFLYLIL FLISIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37860.0flower| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G098300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-45AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533887.20.0transcription factor bHLH66
RefseqXP_028180903.10.0transcription factor bHLH66-like
TrEMBLI1L2E10.0I1L2E1_SOYBN; Uncharacterized protein
STRINGGLYMA09G14380.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-20LJRHL1-like 1