PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G017400.3.p
Common NameGLYMA_09G017400, LOC100784511
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 299aa    MW: 32409.5 Da    PI: 6.9648
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G017400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1084.9e-341973155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Glyma.09G017400.3.p 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-321874IPR009057Homeodomain-like
SuperFamilySSF466897.17E-181873IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251974IPR006447Myb domain, plants
PfamPF002491.1E-92172IPR001005SANT/Myb domain
PfamPF143791.5E-23105151IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDPGSGGNSL GNNSNLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT  60
IYHVKSHLQK YRLAKYLPDS SSDGKKADKK ETGDMLSNLD GSSGMQITEA LKLQMEVQKR  120
LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLSETP GSGVAAVAPG DACQEPDNKT  180
DPSTPDPEKA AKDRAPAKSL SIESFSSHLE PMTPDSGCHV GSPAESPKGE RSAKKQRVIM  240
DGVYSKPEMV LPHQILESSM SLYQQPNTVF LGQDQFDPSL GISTRSGEEL DKVGGGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.605090.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G017400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958120.0BT095812.1 Soybean clone JCVI-FLGm-25I12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586674.10.0MYB-CC domain-containing transcription factor PHR14 isoform X2
RefseqXP_006586676.10.0MYB-CC domain-containing transcription factor PHR14 isoform X4
RefseqXP_028179994.10.0myb family transcription factor PHL7-like isoform X2
RefseqXP_028179998.10.0myb family transcription factor PHL7-like isoform X5
SwissprotQ9SJW01e-122PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0R0I6G90.0A0A0R0I6G9_SOYBN; Uncharacterized protein
STRINGGLYMA09G02040.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-97G2-like family protein