PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G014300.1.p
Common NameGLYMA_09G014300, LOC100820302
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 339aa    MW: 38563.2 Da    PI: 5.6578
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G014300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.62e-29223307186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++ ev+aLi++r+++e+++r   +k+  Wee+s++m   g++rs+k+Ckekwen+nk+yk++  + kkr  ++s+tcpyfd+l+
  Glyma.09G014300.1.p 223 RWPDVEVQALITVRTSLEHKFRFMGSKGSIWEEISEAMNGMGYNRSSKKCKEKWENINKYYKRTIGSGKKR-RQNSKTCPYFDELD 307
                          8*****************************************************************99998.78889*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.34216280IPR017877Myb-like domain
SMARTSM007170.0048220282IPR001005SANT/Myb domain
CDDcd122031.92E-23222286No hitNo description
Gene3DG3DSA:1.10.10.605.9E-4222279IPR009057Homeodomain-like
PfamPF138377.6E-22222307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDLFAGDHFP VPDHVAPFPD SGDLVFAADL LSHRPNPQKL RPIRSVPAAP IAHPPPPPLS  60
HDPIPSGSGH APCHESSSSL DAEDEDDDDN SSASTEGHGP IKKRRKTVRK LEDFLKDLMA  120
KVMEKQEQMH EQLLEIIENK ERERIKREEA WKNEEMERIR KDEEARAQVN SRNLALISFI  180
QNLLGHEIQI PQQPVEPCSK REEDEVEVSA RKDLNNDPSD NNRWPDVEVQ ALITVRTSLE  240
HKFRFMGSKG SIWEEISEAM NGMGYNRSSK KCKEKWENIN KYYKRTIGSG KKRRQNSKTC  300
PYFDELDILY RNGLLSIGNA LSNTSDVPQI EVKELTET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G014300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534745.10.0trihelix transcription factor GTL1
RefseqXP_028180358.10.0trihelix transcription factor GTL1-like
TrEMBLA0A445IVJ10.0A0A445IVJ1_GLYSO; Trihelix transcription factor GT-2
TrEMBLI1L0390.0I1L039_SOYBN; Uncharacterized protein
STRINGGLYMA09G01670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Representative plantOGRP1130157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-46Trihelix family protein