 |
Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.08G297200.4.p |
| Common Name | GLYMA_08G297200 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
Whirly |
| Protein Properties |
Length: 233aa MW: 25606.1 Da PI: 9.9019 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.08G297200.4.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 199.8 | 3.6e-62 | 93 | 231 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90
s+yk+kaal++ ++ p+f ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l++++s e+fhdp++++s+eGkv
Glyma.08G297200.4.p 93 SIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVSEMGSVISLGARDSYELFHDPFKGKSDEGKV 182
7***************************************************************************************** PP
Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
rk lkvePlpdGsG+f+nlsv+n+lv+++es+++Pv+kae avl s ++
Glyma.08G297200.4.p 183 RKILKVEPLPDGSGHFFNLSVQNNLVNVDESIYIPVTKAELAVLTSTFN 231
********************************************99885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0042162 | Molecular Function | telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MSNLQLQLHS PPPSSLLSSS SSPSSLYSSS SLKLFPNHPF STKSLPFNNH KHFSLRCRHT 60
DLFDQNTIAS TPRPTRPSAS VGALPPRVYV GYSIYKGKAA LTLTPRPPEF MPLDSGAYKI 120
SKEGYVLLQF APAVGTRQYD WNRKQVFSLS VSEMGSVISL GARDSYELFH DPFKGKSDEG 180
KVRKILKVEP LPDGSGHFFN LSVQNNLVNV DESIYIPVTK AELAVLTSTF NV*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 2e-84 | 82 | 231 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 2e-84 | 82 | 231 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 2e-84 | 82 | 231 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 2e-84 | 82 | 231 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.32965 | 0.0 | cotyledon| flower| hypocotyl| leaf| somatic embryo| stem |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235235 | 1e-131 | AC235235.1 Glycine max strain Williams 82 clone GM_WBb0028H01, complete sequence. |
