PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G297000.1.p
Common NameGLYMA_08G297000, LOC100799621
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 408aa    MW: 45816 Da    PI: 9.7905
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G297000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.9e-1572131155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Glyma.08G297000.1.p  72 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNDEEAAARAYDLAALKYWG 131
                          789******************888855566447************************987 PP
2AP252.31.4e-16174225155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Glyma.08G297000.1.p 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225
                          89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-1672141IPR016177DNA-binding domain
PfamPF008473.7E-1172131IPR001471AP2/ERF domain
SMARTSM003807.9E-2473145IPR001471AP2/ERF domain
PROSITE profilePS5103219.46773139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1473140IPR001471AP2/ERF domain
PRINTSPR003673.0E-57485IPR001471AP2/ERF domain
CDDcd000183.63E-25174235No hitNo description
PfamPF008475.1E-12174225IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18174235IPR016177DNA-binding domain
SMARTSM003802.7E-26175239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18175234IPR001471AP2/ERF domain
PROSITE profilePS5103218.953175233IPR001471AP2/ERF domain
PRINTSPR003673.0E-5215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MELAPVKSEL SPRSHRLLMI DGSEVIGTKC VKRRRRDSST AVLGGNGQQG EQLEEQKQLG  60
GQSTATTVKR SSRFRGVSRH RWTGRFEAHL WDKGTWNPTQ KKKGKQVYLG AYNDEEAAAR  120
AYDLAALKYW GISTFTNFPV SDYEKEIEIM KTVTKEEYLA SLRRRSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW  240
LRPGTHPTAS HDQKPSTDAQ PFATSNSMQA RGNIEVSNSN KNSFPSGKLD STKKRDFSKY  300
MNPLSPCNKP SSPTALGLLL KSSVFRELMQ RNLNSSSEEA EEVELKYPHE GNDGVGGIYD  360
NENTNNSYFC SSNISRLPNL ESSEESPLPM YHGTVQSLWN SAFNMSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G297000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931680.0BT093168.1 Soybean clone JCVI-FLGm-24O15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530686.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLK7L9R60.0K7L9R6_SOYBN; Uncharacterized protein
STRINGGLYMA08G40831.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-71AP2 family protein