PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G279000.1.p | ||||||||
Common Name | GLYMA_08G279000, LOC100814405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 448aa MW: 48905.1 Da PI: 8.2226 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 163 | 222 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Glyma.08G279000.1.p 163 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 222 57*******************666664478446**********99*************98 PP | |||||||
2 | AP2 | 49.3 | 1.2e-15 | 266 | 316 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Glyma.08G279000.1.p 266 AYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 316 69***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.08E-21 | 163 | 232 | No hit | No description |
Pfam | PF00847 | 1.7E-11 | 163 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-17 | 163 | 232 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.137 | 164 | 230 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-28 | 164 | 236 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-16 | 164 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-7 | 165 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 265 | 326 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.49E-24 | 265 | 326 | No hit | No description |
Pfam | PF00847 | 6.6E-10 | 266 | 316 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.296 | 266 | 324 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-32 | 266 | 330 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-19 | 266 | 325 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-7 | 306 | 326 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MAGATNWLTF SLTHMEMQQF GPYDTTTHSH CFNDSNFYGW TNSKSVMDSQ SETQQLAVPK 60 MEDFYFGDHQ QDLKAMIVPG FKALSGTNSG SEVDDSTSNK TVTRVAPAAL GGAHSGESNC 120 KGSALTLCDV AANGSDDSNN KAVVAVGFDT RKKVAHTFGQ RTSIYRGVTR HRWTGRYEAH 180 LWDNSCRREG QARKGRQVYL GGYDKEDKAA RAYDLAALKY WGPTATTNFP ISNYTKELEE 240 MEHAGRQEFI ASLRRKSSGF SRGASAYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFSTE 300 EEAAEAYDIA AIKFRGSSAV TNFEMSRYDV DTILNNSLPV GGVAKRLKVS PATENKALIS 360 TIIQPPQNTN ASSSINFSAI QPVSSIPYDS AITCYPHNFF HHHFNPTNGG TSSSDSAAAA 420 AVTDAIALNT LPPPAVPGFF IWPHQSY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Confined to the central region of inflorescence ane floral meristems, progressively restricted to the innermost cells of the dome. Also detected in developing stamen locules and later in sporogonous cells within locules. In carpel primordia, found in placenta and in young ovule primordia. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G279000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235204 | 1e-131 | AC235204.1 Glycine max strain Williams 82 clone GM_WBb0017J04, complete sequence. | |||
GenBank | AC235391 | 1e-131 | AC235391.1 Glycine max strain Williams 82 clone GM_WBb0116P03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006585923.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Swissprot | Q6J9N8 | 1e-127 | AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7 | ||||
TrEMBL | K7L9D0 | 0.0 | K7L9D0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G38190.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4810 | 31 | 49 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 1e-124 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G279000.1.p |
Entrez Gene | 100814405 |
Publications ? help Back to Top | |||
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