PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G261900.1.p | ||||||||
Common Name | GLYMA_08G261900, LOC100789066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 23545.9 Da PI: 8.2917 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.7 | 1.5e-27 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C++lr++C +dC+++p++ p++q++++ +++k++G++ +++l++++p+++ +++++sl+yeA+ r+ +P G+vg+++++++ Glyma.08G261900.1.p 4 SCNGCRILRKGCGEDCAIRPCLewintPQAQANATLFLAKFYGRAGLVNLIDSAPQHNGPAVFKSLLYEACGRIANPTFGSVGLFWTGEW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelallkee 100 +q++++++l++++ Glyma.08G261900.1.p 94 AQCQAAVDAVLAGSQ 108 ********9999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.614 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-22 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MKLSCNGCRI LRKGCGEDCA IRPCLEWINT PQAQANATLF LAKFYGRAGL VNLIDSAPQH 60 NGPAVFKSLL YEACGRIANP TFGSVGLFWT GEWAQCQAAV DAVLAGSQIK VVGASDSQGI 120 ATHGDEHVAQ ILGIRHVSKD AEMDHVKGRA KKIKRSRTVI KPKPQVSSID SAAMLKLTWS 180 REPGRSEGDS EETVEAMLVS QNKPSRNGGV EMDLDLTLG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G261900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340934.1 | 1e-163 | LBD domain-containing transcription factor | ||||
Refseq | XP_028223153.1 | 1e-163 | LOB domain-containing protein 41-like | ||||
TrEMBL | A0A445EYC8 | 1e-162 | A0A445EYC8_GLYSO; LOB domain-containing protein 41 | ||||
TrEMBL | K7L8Z2 | 1e-162 | K7L8Z2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G31143.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14785 | 6 | 14 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 6e-65 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G261900.1.p |
Entrez Gene | 100789066 |