PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G261500.1.p
Common NameGLYMA_08G261500, LOC102667919
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 365aa    MW: 40159.3 Da    PI: 4.2829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G261500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-17109156253
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                          +ykGVr +k +g+W+AeIrd +     + +r++lg+f taeeA +a++  r+++
  Glyma.08G261500.1.p 109 KYKGVRMRK-WGKWAAEIRDpF-----KgTRIWLGTFSTAEEASQAYETRRLEF 156
                          8******99.**********55.....45******************9777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-16109155IPR016177DNA-binding domain
CDDcd000183.95E-23109149No hitNo description
SMARTSM003801.0E-18109163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-21109156IPR001471AP2/ERF domain
PfamPF008471.1E-9109156IPR001471AP2/ERF domain
PROSITE profilePS5103219.203109166IPR001471AP2/ERF domain
PRINTSPR003677.7E-10110121IPR001471AP2/ERF domain
PRINTSPR003677.7E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVEPLNQSTP RTKKMKHKRN PIHDSKMTRK LRIICNDPDA TDSSSDEDEY FGNVRKMKRT  60
VLEIALPPVP VNPVVADETS TESTNNDELN QTKRVMAKTP SVKRQSCGKY KGVRMRKWGK  120
WAAEIRDPFK GTRIWLGTFS TAEEASQAYE TRRLEFEVMA KALSDEKSNN GSSNNNVVAS  180
AETETVAAPE NNSSNYYVSS AAGSVSDSKS AFMDESESVL SHTSPSSVLE LDTSASNLIG  240
SGKVSSNEIV ETKGLEAEVA ETKSLAAEFA ELEIQDLSML NVPSPSAVAA ATSEYELDLL  300
AFDSFKYGFD YEHGFDDDFA ALEDIHICSF DDNEPSELPD YDFDDFGADE FAGWIEEPLN  360
IPCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-121081501356Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.456023e-31somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G261500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352720.0AC235272.1 Glycine max strain Williams 82 clone GM_WBb0046N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585851.10.0ethylene-responsive transcription factor ERF118
RefseqXP_006585852.10.0ethylene-responsive transcription factor ERF118
RefseqXP_006585853.10.0ethylene-responsive transcription factor ERF118
TrEMBLK7L8Z10.0K7L8Z1_SOYBN; Uncharacterized protein
STRINGGLYMA08G30716.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-31ERF family protein