PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G220800.1.p | ||||||||
Common Name | GLYMA_08G220800, LOC100819898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 314aa MW: 35882.6 Da PI: 8.1762 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.1 | 3.2e-16 | 50 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+a++ a++k++g Glyma.08G220800.1.p 50 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqsKKgRQVYLGAYDDEEAAARAYDLAALKYWG 109 57*******************999977777557*************************98 PP | |||||||
2 | AP2 | 52.8 | 9.7e-17 | 152 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Glyma.08G220800.1.p 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 203 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-12 | 50 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 50 | 119 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-17 | 51 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-28 | 51 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.587 | 51 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 52 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.25E-15 | 152 | 213 | No hit | No description |
Pfam | PF00847 | 2.8E-12 | 152 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 152 | 213 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.268 | 153 | 211 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 153 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-24 | 153 | 217 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 193 | 213 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MRVQCSGPLS FLIFMAKKSQ KSLKNNNNNN TTRKRTRKSV PRDSPPQRSS IYRGVTRHRW 60 TGRYEAHLWD KNCWNESQSK KGRQVYLGAY DDEEAAARAY DLAALKYWGQ DTILNFPLSN 120 YEEKLKEMEG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY 180 LGTYATQEEA AAAYDMAAIE YRGLNAVTNF DLSRYINWPR PKTEENHQNT PSNQNVNSNA 240 ELELGSASDE ITEEGVARSS ESESNPSRRT FPEDIQTIFE NNQDSGIYIE NDDIIFGDLG 300 SFGAPIFHFE LDV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G220800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530350.2 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Refseq | XP_028245553.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 1e-122 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A445JIE3 | 0.0 | A0A445JIE3_GLYSO; AP2-like ethylene-responsive transcription factor isoform A | ||||
TrEMBL | K7L840 | 0.0 | K7L840_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G23630.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-103 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G220800.1.p |
Entrez Gene | 100819898 |
Publications ? help Back to Top | |||
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