PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G215500.1.p
Common NameGLYMA_08G215500, LOC100809422
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 329aa    MW: 36836.3 Da    PI: 6.1895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G215500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13147192555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++ErrRR+++ ++f  L   +P +      K +Ka++L+ A++Y+k+Lq
  Glyma.08G215500.1.p 147 HIMAERRRRQDLTERFIALSATIPGL-----SKTDKASVLRAAIDYLKQLQ 192
                          999**********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.828142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-17143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-13147196No hitNo description
PfamPF000101.5E-10147192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEEPWENWHL HMEMDCGNDF SGKCHGTHDD EFLRDILLQQ PPAAFSSESE SDHSFRPVVQ  60
NTTITNDGAV KSNSSQISSK RPRPLSTPRT YILSFDNSTM LPASPEPRLR SSNNNSPWPP  120
ESPGPEPRRP ITGGAKKTRT SSQTIDHIMA ERRRRQDLTE RFIALSATIP GLSKTDKASV  180
LRAAIDYLKQ LQERVQELEK QDKKRSKESV IFNKKPDPNG NNNEDTTTST ETNCSILPEM  240
EVRVLGKEVL IEIHCEKENG VELKILDHLE NLHLSVTGSS VLPFGNSSLC ITITAQMGDG  300
YQMTMNDLVK NLRQVLSKSH LLSDSDPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17983KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.440340.0flower| hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G215500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585623.10.0transcription factor bHLH18
SwissprotQ9T0722e-43BH025_ARATH; Transcription factor bHLH25
TrEMBLK7L8010.0K7L801_SOYBN; Uncharacterized protein
STRINGGLYMA08G23050.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-42bHLH family protein