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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G215400.1.p | ||||||||
Common Name | GLYMA_08G215400, LOC100808003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 276aa MW: 31086.8 Da PI: 8.1947 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.6e-13 | 110 | 155 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR++i ++f L +P + kKl+Ka++L++A +Y+++Lq Glyma.08G215400.1.p 110 HVMSERKRRQDIAEKFLALSATIPGL-----KKLDKATVLREALNYMQQLQ 155 8899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.091 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-16 | 108 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.98E-11 | 110 | 159 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-15 | 110 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 110 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-13 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.849 | 209 | 275 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MLSLLPDMME DSWENWLSHL EMNDDFGCTN AVSFDEMVRF NNDSSNVVAA IGPKVEYTDS 60 YLKSSEEEFG TSCYWPKRGV ENNHELEAKT IRDNDRGTKR ARTSTETQYH VMSERKRRQD 120 IAEKFLALSA TIPGLKKLDK ATVLREALNY MQQLQQRIAV LEKAGGNKNK SIKSLIITKS 180 RLCSASCETN SISEVLPEVE ARGLGKEVLI RIYCEKRKGI ILKLLALLKD LHLSIASSSV 240 LPFGNSILNI IIIAQMSEKY NMTVNDLAKS LKQIF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 118 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G215400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014634637.1 | 0.0 | transcription factor bHLH25 | ||||
Refseq | XP_025985464.1 | 0.0 | transcription factor bHLH25 | ||||
Refseq | XP_028247137.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_028247138.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | A0A0R0IQG8 | 0.0 | A0A0R0IQG8_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JI80 | 0.0 | A0A445JI80_GLYSO; Transcription factor bHLH25 isoform A | ||||
STRING | GLYMA08G23035.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14964 | 8 | 13 |
Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G215400.1.p |
Entrez Gene | 100808003 |