PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 320aa MW: 35064.1 Da PI: 7.3006

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G203600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	184	222	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Glyma.08G203600.1.p 184 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 222 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.706	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-10	182	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.68E-6	182	226	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.3E-7	186	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MMAGNPNWWT MHPPSLIPPQ YVFGSSSIPF NSSTQNQEPP QSLSQLLFTG LPGEEERIAF 60 SPFQSKKLDE WNDQMLNIPS PIVPMPDVIK QEVSQSGSLY HHGHDQEFQV SGAPWSHMVP 120 ISSSPRSSVA SFSSNNLLDF TYNKTDHRKN QLPDTSECNS TATAGVYKKT KSQPSSSQPP 180 LKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQGQIEALSS PYLGNGSKNM 240 RNPQSQQVHG ERNSVFPEDP GQLLNDNGLK RKGAPNQDAK DKPSDLKSRG LCLVPVSCTQ 300 HVGNENGADY WAPAYGSGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.32337	0.0	stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G203600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006585586.1	0.0	transcription factor bHLH68 isoform X1
Refseq	XP_028244521.1	0.0	transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	6e-64	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A445JHL5	0.0	A0A445JHL5_GLYSO; Transcription factor bHLH68
TrEMBL	I1KV51	0.0	I1KV51_SOYBN; Uncharacterized protein
STRING	GLYMA08G21770.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79
Representative plant	OGRP3780	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G203600.1.p
Entrez Gene	100806379

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]