PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G167000.1.p
Common NameGLYMA_08G167000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 305aa    MW: 34710.3 Da    PI: 4.7034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G167000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-06178219955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r RR++i ++ +eL +l+P       +K++ ae+L  A +Y+ +Lq
  Glyma.08G167000.1.p 178 ARERRRKITKKTQELGKLVPGG-----PKMNTAEMLHAAGKYVMYLQ 219
                          699*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-10168229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.185169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-9172231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.25E-5175222No hitNo description
SMARTSM003534.7E-7175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-4179219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MALSTYFNFE TLQIPNLETN TFHEAMPEEV AAPNLQQLFP YSDESFFLSD ALFENYIDPT  60
GGFLYPPDVN PPYDGDIFPT HKDYKLLPCS KRQKCCYEEQ QRQQEHVYSS SLQEFTTPTL  120
PSSFLDGFVI PYDNCCSLQA EELQQKLFSE TQYGDTCVDL PCEKKGNERT ISPQSVAARE  180
RRRKITKKTQ ELGKLVPGGP KMNTAEMLHA AGKYVMYLQA QVGMLELMNT LEQEDKAEPP  240
PENLHALVAS PFVQEKLYTE ERCFVPKEVV TTLTNHKDVQ SRPTILKDLK QLIGTDIEKK  300
AKQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G167000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150426e-35AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586395.10.0transcription factor bHLH52
RefseqXP_028243023.10.0transcription factor bHLH52-like
TrEMBLK7L7600.0K7L760_SOYBN; Uncharacterized protein
STRINGGLYMA08G17747.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-31bHLH family protein