PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G166900.1.p
Common NameGLYMA_08G166900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 275aa    MW: 31488.8 Da    PI: 5.1079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G166900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-071471871055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r RR++i ++ +eL +l+P       +K++ ae+L  A +Y+k Lq
  Glyma.08G166900.1.p 147 RERRRKITEKTQELGKLVPGG-----PKMNTAEMLHAAAKYVKFLQ 187
                          89*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.443137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-11147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-5147187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-7147190No hitNo description
Gene3DG3DSA:4.10.280.101.3E-10147194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MPEEEVAAPN LQHFFSYLDE SFFLSNTLLE NYIDPTFGFL YPPGINHPYD PFTSLTSRDD  60
IFPTHEDYNL LPCPKRKKCC YEEKQQHQEH VYSSLQEITT PTLLSNLIDG FVVPYENCSS  120
FQAEELQQPV FYECEKRGTK RPISPPRERR RKITEKTQEL GKLVPGGPKM NTAEMLHAAA  180
KYVKFLQAQV GMLELMNILE EDKAEPPPEN IHALVVSPLV QEKLYTEERC FVPNGIVTTL  240
TNHEDVHSRP TILEDLKQLI GTDIEKKQSK TKSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G166900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150424e-42AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586394.10.0transcription factor bHLH52
RefseqXP_028243019.10.0transcription factor bHLH52-like
TrEMBLA0A0R0IN340.0A0A0R0IN34_SOYBN; Uncharacterized protein
STRINGGLYMA08G17734.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-29bHLH family protein