PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G163200.1.p
Common NameGLYMA_08G163200, LOC100791209
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 328aa    MW: 37067.6 Da    PI: 6.6379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G163200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
  Glyma.08G163200.1.p 13 RGLWSPEEDEKLLRYINTHGHKSWSSVPKFAGLQRCGKSCRLRWINYL 60
                         788*******************************************97 PP
2Myb_DNA-binding55.51.3e-1766109146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Glyma.08G163200.1.p  66 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-26563IPR009057Homeodomain-like
PROSITE profilePS5129418.062860IPR017930Myb domain
SuperFamilySSF466894.3E-3010107IPR009057Homeodomain-like
SMARTSM007176.7E-141262IPR001005SANT/Myb domain
PfamPF002492.2E-161360IPR001005SANT/Myb domain
CDDcd001674.78E-121660No hitNo description
PROSITE profilePS5129426.46861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2664116IPR009057Homeodomain-like
SMARTSM007171.8E-1665113IPR001005SANT/Myb domain
PfamPF002498.5E-1666109IPR001005SANT/Myb domain
CDDcd001673.64E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGHRCCSKQK IKRGLWSPEE DEKLLRYINT HGHKSWSSVP KFAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPQTHTLLSS HRRSSACTIS NNIHQNSNSI FIMSSHIPNA PFETTCQTFS TLPKPPPNIV  180
QTPSSIVSSE FQTLSTILSD DGEPLQHLPY ELLMENATNI CSPTYMNPSA VELCNDDNNV  240
NWVSRLNVHD FSAQTLEEGA QVLQVQQEKG KTFDDKGSDV REANKGNLET SVSFESSNFD  300
LGFLESVLTS EFISHDLNCM DELAWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in anthers early during endothecial development, with maximal expression during pollen mitosis I and bicellular stages. {ECO:0000269|PubMed:17329564}.
UniprotTISSUE SPECIFICITY: Highly expressed in flowers. {ECO:0000269|PubMed:12753590}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G163200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532906.10.0transcription factor MYB26
RefseqXP_028247200.10.0transcription factor MYB26-like
SwissprotQ9SPG31e-66MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A445JFK30.0A0A445JFK3_GLYSO; Transcription factor MYB86
TrEMBLK7L7430.0K7L743_SOYBN; Uncharacterized protein
STRINGGLYMA08G17371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-88myb domain protein 67
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]