PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G242000.2.p
Common NameGLYMA_07G242000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 905aa    MW: 102287 Da    PI: 7.1599
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G242000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1134.34.2e-423912928118
                 CG-1  28 lelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                           ++ +   +g+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np+f rrcywlL++++e+ivlvhy+e+
  Glyma.07G242000.2.p  39 PNEIHAMLCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYRET 128
                          456667789*******************************************************************************98 PP

                 CG-1 118 k 118
                          +
  Glyma.07G242000.2.p 129 Q 129
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143768.13925134IPR005559CG-1 DNA-binding domain
SMARTSM010765.0E-5828129IPR005559CG-1 DNA-binding domain
PfamPF038598.0E-3536127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.7E-4349441IPR013783Immunoglobulin-like fold
PfamPF018332.1E-4352438IPR002909IPT domain
SuperFamilySSF812967.0E-15352439IPR014756Immunoglobulin E-set
CDDcd002043.53E-16537647No hitNo description
Gene3DG3DSA:1.25.40.202.5E-17538651IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.08E-19539652IPR020683Ankyrin repeat-containing domain
PfamPF127969.3E-8545617IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.857555647IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.007588620IPR002110Ankyrin repeat
SMARTSM002481.1E-5588617IPR002110Ankyrin repeat
SMARTSM00248940627656IPR002110Ankyrin repeat
SuperFamilySSF525402.47E-6735802IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.7751773IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.382752781IPR000048IQ motif, EF-hand binding site
PfamPF006120.025754772IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0016774796IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718775799IPR000048IQ motif, EF-hand binding site
PfamPF006120.0045776796IPR000048IQ motif, EF-hand binding site
SMARTSM0001511855877IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187857885IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MANNLAVQLV GSEMHGFHTL QDLDVGSIME EARTRWLRPN EIHAMLCGTI VLFDRKMLRN  60
FRKDGHNWKK KKDGKTVKEA HEHLKVGNEE RIHVYYAHGQ DNPNFVRRCY WLLDKSMEHI  120
VLVHYRETQE MQGSPVTPVN SHSSSVSDPP APWILSEEID SGTTTAYTGD MSNNINVKSH  180
ELRLHEINTL EWDDLVDTND HNASTVPNGG TVPYFDQQDQ ILLNDSFGNV ANNLSAEIPS  240
FGNLTQPIAG SNRVPYNFSE SVTLQTMDNQ ANPHEQKNNT VSLSGVDSLD TLVNDRLQSQ  300
DSFGMWVNHI MSDSPCSVDD PALESPVSSI HEPYSSLVVD SQESSLPEQV FTITDVSPTC  360
VSSTEKSKVL VTGFFLKDYM HLSKSNLLCV CGDVSVPAEI VQVGVYRCWV SPHSPGFVNL  420
YLSIDGHKPI SQVVNFEYRT PALHDPAVSM EESDNWDEFR QQMRLAYLLF AKQLNLDVIS  480
SKVSPNRLKE ARQFALKTSF ISNSWQYLIK STEDNQIPFS QAKDALFGIT LKNRLKEWLL  540
ERIVLGCKTT EYDAHGQSVI HLCAILGYNW AVSLFSWSGL SLDFRDRFGW TALHWAAYCG  600
REKMVATLLS AGAKPNLVTD PTPQNPGGCT AADLAYMRGH DGLAAYLSEK SLVQHFNDMS  660
LAGNISGSLE TSTTDPVNPA NLTEDQQNLK DTLTAYRTAA EAASRIHAAF REHSLKLRTK  720
AVASSNPEAQ ARKIVAAMKI QHAFRNHETK KMMAAAARIQ CTYRTWKIRK EFLNMRRQAV  780
KIQAAFRCFQ VRKHYRKILW SVGVVEKAVL RWRLKRRGFR GLQVKTVDAG TGDQDQQSDV  840
EEEFFRTGRK QAEERVERSV VRVQAMFRSK KAQEEYRRMK LALNQAKLER EYEQLLSTEV  900
DMQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.487300.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G242000.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028241620.10.0calmodulin-binding transcription activator 6-like isoform X2
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0R0JD920.0A0A0R0JD92_SOYBN; Uncharacterized protein
STRINGGLYMA07G37090.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]