PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G223600.1.p

Common Name

GLYMA_07G223600, Glyma07g35000.1, LOC100802822

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 160aa MW: 17337.6 Da PI: 7.8619

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G223600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.7	1.3e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++l e++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l Glyma.07G223600.1.p 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLAEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVL 102 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +++la++++e Glyma.07G223600.1.p 103 QTQLAVAQAE 112 ***99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.511	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MKDGGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQD 60 LAEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEAVHLRVRQ 120 TASLYSPTSP TNSGSPSQAK PIFDMDMVVD QNSYGDSMW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	9	112	7	110	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	9	112	7	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G223600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031096	0.0	KT031096.1 Glycine max clone HN_CCL_198 AS2 transcription factor (Glyma07g35000.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001340932.1	1e-116	LBD domain-containing transcription factor
Refseq	XP_028241406.1	1e-116	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	4e-73	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A445K026	1e-115	A0A445K026_GLYSO; LOB domain-containing protein 4
TrEMBL	I1KMA9	1e-115	I1KMA9_SOYBN; AS2 transcription factor
STRING	GLYMA07G35000.1	1e-116	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-73	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Glyma.07G223600.1.p
Entrez Gene	100802822

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]