PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G208000.1.p
Common NameGLYMA_07G208000, LOC100809747
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 168aa    MW: 18500.3 Da    PI: 9.4766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G208000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-0556951054
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         + R ++i +++  L++l+ +      +K + +++L++A+eYI  L
  Glyma.07G208000.1.p 56 KERKEKIGKRIVALQQLVSPY-----GKTDTSSVLKEAMEYIGFL 95
                         778899999*********999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-945111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3184695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1148109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008952101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-456100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MIASSFCNAD SMFSREEGID VRKMMEHKRS PCSVDQSSYT SIASKRQKAD LSISTKERKE  60
KIGKRIVALQ QLVSPYGKTD TSSVLKEAME YIGFLHKQVK LLSAPYLESS PAAKMQGMEP  120
CSLRSRGLCL VPVSFTIGVA ETNGADIWAP IKTTTSPKFE KDVSQFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G208000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310980.0KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529377.11e-122transcription factor bHLH153 isoform X1
RefseqXP_028241180.11e-122transcription factor bHLH153-like isoform X1
SwissprotQ7XJU22e-59BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A445JZF01e-121A0A445JZF0_GLYSO; Transcription factor bHLH153 isoform A
TrEMBLI1KLV71e-121I1KLV7_SOYBN; Uncharacterized protein
STRINGGLYMA07G32980.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-61bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]