PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G201200.2.p
Common NameGLYMA_07G201200, LOC100818817
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 1782aa    MW: 199314 Da    PI: 5.262
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G201200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.71e-1847102257
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           kR+  t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk
  Glyma.07G201200.2.p  47 PKRQMKTPFQLETLEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKK 102
                          69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-1926102IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1733102IPR009057Homeodomain-like
PROSITE profilePS5007116.81143103IPR001356Homeobox domain
SMARTSM003891.2E-1845107IPR001356Homeobox domain
PfamPF000462.2E-1647102IPR001356Homeobox domain
CDDcd000861.00E-1448102No hitNo description
PROSITE profilePS5082716.1556615IPR018501DDT domain
SMARTSM005714.3E-20556615IPR018501DDT domain
PfamPF027911.9E-16558612IPR018501DDT domain
PfamPF050661.7E-15738806IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156125.9E-8944986IPR028942WHIM1 domain
PfamPF156131.5E-1211241196IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1782 aa     Download sequence    Send to blast
MEGEGCSEGE NNRKRGGSDD DSNENNNNNN NGSSGKIVNS NEGQSKPKRQ MKTPFQLETL  60
EKAYAVDNYP SETMRVELSE KLGLSDRQLQ MWFCHRRLKD KKDLPSKKPP RKVLAEPLPD  120
SPRDDPRLSL ELANEYGSGS GSGSSPYARV EPLNVVPRCV PGYYESPQAK LELRAIACVE  180
AQLGEPLRDD GPILGLEFDP LPPDAFGAPI AVTEQQKLPS FAYDSKIYER HDARTNKALA  240
RTFRDNQFLP NKSGIRSDAS GQFSQSHLHD PIEGFVRNPP FAHGNEHLPR IHATKGHSSR  300
VRLLSQQDKQ LIPYQSPSRD DDAAPQRELY PNIANAGKNS HSTGHQIVGP ENLHALPSVQ  360
VLHNNATWIE KKRKSDDAHD VEAHEMKIRK ELEKQDNLRR KSEERTRKEM ERQDRERKKE  420
EERLMRERQR EEERARREQK REMERREKFL LKENLKAEKT RQREELRKER EAERRKAALE  480
KATARRMAKE SMELIEDEQL EMMELAASST GFSSIVHLDF DTLQHIESFR DSLCVFPPKS  540
VKLRKPFAIK PWINSENNVG NLLMVWRFLI NFADVLELWS FTLDEFVQAF HDYDSRLLGE  600
IHVSLLKVII KDIEDVARTP STGLGANQNG AANTGGGHPE IVAGAYAWGF DIRNWHKHLN  660
LLTWPEIFRQ LALSAGYGPQ LKKRSISWSY ANNKDEGRSC EDIISTLRNG SAAENAVAKM  720
HERGLLAPRR SRHRLTPGTV KFAAFHVLSL EGEKGLNVLE LAEKIQKSGL RDLTTSKTPE  780
ASISVALTRD AKLFERIAPS TYCVREAFRK DPADAESILS EARKKIQIFE NGFLAGEDAD  840
DVERGESESD EIDEDPEVDD LVNPTSANKT SEQCDDFSSN GKENLGHNVE LQGEFDKNLP  900
CFPESGSKNA DAPIAVTGQS GACEDLDVGN LGEDNMEIDE RKPGESWVQG LAEEEYSDLS  960
VEERLNALAV LVGVANEGNS IRVVLEDRLE AANALKKQMW AEAQVDKVRL KDDTFSKSDF  1020
PSINGNKVEI QYSCPVTEGK QSPLLGINIG NNINNSVPSP SIAENHKAAS GSQSLSVEKH  1080
SSVQDLCTGP DNPQAQSFVQ YSKRSRSQWK SYISHMAEEM YVYRSLPLGQ DRRRNRYWQF  1140
VASASSNDPG SGRIFVEYLD GNWRLIDTEE AFDVLLNSLD SRGIRESHLR LMLQKVEISF  1200
KENVRLNTQC SKIGSIGETC VKNEADETDS SPDRHTGSDS PSSTLCGLNS DTSETSSSFK  1260
IELGKSESDK KSALRRYQDF QKWMWKECYN SPILCAMKYG KKRCKPQVVI CDICLNPYFF  1320
EDSHCSGCHQ TFSSNSGFSF SKHAFQCGDK LSKNICILDS SLPLRTRLLK AMLAFIEVSV  1380
PPEAFQSNWT EDIRRHWSVK LSKSSSVEEL LQILTLLERA LKRDFLSSTF STTGEQLGLN  1440
SMSKSAAQTS TDPESVAVLP WVPLTTSAAS LRLLEFDASI VYVPHEKPEP CEEKEDRVYM  1500
KLPSRYNPSK SSKAAEAADL DHDEFMKVKS ASVKIVQSNN KRGRGSRDKG RGKKLSKTKQ  1560
NTGHRGAKVA GNASQRIKQQ EVGSQGQAGG RGRRTVRKRR VGKKAVEDLL LGHRGATHSS  1620
SIGRESLRSM DEDWDDEKAS PVTPIHMGAA NNSNSIEEAE SDDNVQAMES DDNVQAMESD  1680
DNEQAAESDD NGQAVEYDQG NWEIGFNGAP SRWSRDLVGM SDDDVEASED DDDNDNVIGI  1740
ENNGEEDSEA DAMSEEGSDG TANRIVNEES SESDVSEDSS D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRLKDKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G201200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583835.20.0homeobox-DDT domain protein RLT1 isoform X2
TrEMBLA0A0R0JBV90.0A0A0R0JBV9_SOYBN; Uncharacterized protein
STRINGGLYMA07G32180.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator