PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G185300.2.p
Common NameGLYMA_07G185300, LOC100799262
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 330aa    MW: 37097.9 Da    PI: 6.7015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G185300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12153200355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  l+P +     +K +Ka++L  A++Y+k+Lq
  Glyma.07G185300.2.p 153 QDHIIAERKRREKLSQRFIALSALVPGL-----QKTDKASVLGDAIKYLKQLQ 200
                          5799***********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.12150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-17152214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10154200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17154218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-12155203No hitNo description
SMARTSM003531.7E-14156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEISSIRGLP DDMEQEIMED ATFLHQWHLS SIDDPNLLPI AAAFGETLQH HAFSTYPNFN  60
PKTSMETTLA DDERGTKHHR NISLNPNSKS AQTSSETQFV SFPNLFSFVD SNHTTPPPDT  120
ISQGTLGNHN NYVFKACQEA KKTGKRYKHS QPQDHIIAER KRREKLSQRF IALSALVPGL  180
QKTDKASVLG DAIKYLKQLQ EKVNALEEEQ NMKKNVESVV IVKKCQLSND VNNSSSEHDG  240
SFDEALPEIE ARFCERSVLI RVHCEKSKGV VENTIQGIEK LHLKVINSNT MTFGRCALDI  300
TVIAQMDMEF CMGVKDLVRN LRSAFTSFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14151215569Transcription factor MYC2
5gnj_B2e-14151215569Transcription factor MYC2
5gnj_E2e-14151215569Transcription factor MYC2
5gnj_F2e-14151215569Transcription factor MYC2
5gnj_G2e-14151215569Transcription factor MYC2
5gnj_I2e-14151215569Transcription factor MYC2
5gnj_M2e-14151215569Transcription factor MYC2
5gnj_N2e-14151215569Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G185300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633046.10.0transcription factor bHLH19 isoform X1
SwissprotQ9T0721e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLK7L2J30.0K7L2J3_SOYBN; Uncharacterized protein
STRINGGLYMA07G30420.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-59bHLH family protein