PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G185300.1.p | ||||||||
Common Name | GLYMA_07G185300, LOC100799262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 37097.9 Da PI: 6.7015 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.5e-12 | 153 | 200 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + +K +Ka++L A++Y+k+Lq Glyma.07G185300.1.p 153 QDHIIAERKRREKLSQRFIALSALVPGL-----QKTDKASVLGDAIKYLKQLQ 200 5799***********************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.12 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-17 | 152 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-10 | 154 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-17 | 154 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.59E-12 | 155 | 203 | No hit | No description |
SMART | SM00353 | 1.7E-14 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEISSIRGLP DDMEQEIMED ATFLHQWHLS SIDDPNLLPI AAAFGETLQH HAFSTYPNFN 60 PKTSMETTLA DDERGTKHHR NISLNPNSKS AQTSSETQFV SFPNLFSFVD SNHTTPPPDT 120 ISQGTLGNHN NYVFKACQEA KKTGKRYKHS QPQDHIIAER KRREKLSQRF IALSALVPGL 180 QKTDKASVLG DAIKYLKQLQ EKVNALEEEQ NMKKNVESVV IVKKCQLSND VNNSSSEHDG 240 SFDEALPEIE ARFCERSVLI RVHCEKSKGV VENTIQGIEK LHLKVINSNT MTFGRCALDI 300 TVIAQMDMEF CMGVKDLVRN LRSAFTSFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 151 | 215 | 5 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 163 | ERKRRE |
2 | 159 | 164 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G185300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014633046.1 | 0.0 | transcription factor bHLH19 isoform X1 | ||||
Swissprot | Q9T072 | 1e-56 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | K7L2J3 | 0.0 | K7L2J3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G30420.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 | Representative plant | OGRP656 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G185300.1.p |
Entrez Gene | 100799262 |