PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G083500.1.p
Common NameGLYMA_07G083500, LOC100786555
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 335aa    MW: 36325.8 Da    PI: 6.3576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G083500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000691992371255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Glyma.07G083500.1.p 199 RKEKLGERITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237
                          5667778888888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.28187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-7197244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-10197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-6197241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMTGNPN WWNININSMA PQAPPFLSTP NNFPIPCAPT SLPFPSWHEN  60
QDLPESWSQL LMSGVVDEQG KAGMGQFIQT KKLESWEDQM LGQAPNASLV DVKQENLVNS  120
YAYGHGSEEL QSSKPSWSPK SCVTTSFSSN MLDFSNNKTD ARHPPPDLSS ECNSTAAGGA  180
LKKARVQPSA TTQTTFKVRK EKLGERITAL HQLVSPFGKT DTASVLLEAI GYIRFLQSQI  240
EALSLPYLSG GSGNTRQQHS VQGEKTCIFP EDPGQLLDEN CLKRKAAGEP DTQEEPKKGL  300
RSRGLCLVPV SCTLQVGSDN GADYWAPALG GGFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320750.0cotyledon| epicotyl| hypocotyl| leaf| meristem| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G083500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938720.0BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240881.10.0uncharacterized protein LOC100786555
SwissprotQ8S3D11e-100BH068_ARATH; Transcription factor bHLH68
TrEMBLC6T8R90.0C6T8R9_SOYBN; Uncharacterized protein
STRINGGLYMA07G09180.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]