PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G049100.1.p | ||||||||
Common Name | GLYMA_07G049100, LOC100789928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 385aa MW: 43512.5 Da PI: 5.5136 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 181 | 232 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Glyma.07G049100.1.p 181 QRMTHIAVERNRRRQMNDHLSVLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 232 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.38E-13 | 179 | 236 | No hit | No description |
SuperFamily | SSF47459 | 8.11E-17 | 180 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.751 | 180 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 181 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 181 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 186 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MERLQGPLNS CFFGDPLEVN CLDQVLVDEE SLRLEEEEQF LISSLEDNMP FLQMLQSVES 60 PQFFPLKEPN FQTLLRLQHM KKPWEGIAYI PRMEAQVQAA LELESCVTHD MLEMQSPVKS 120 ESNELQHPLS ISCFEKVNYE CNQEPQKVSQ TCPKSQPAAT RERRKRKRTR PSKNKEDVEN 180 QRMTHIAVER NRRRQMNDHL SVLRSLMPPS YIQRGDQASI IGGAIDFVKE LEQLLQSLEA 240 QKRMRKNEEG GGGSSSSTML CKPPPPSSLS SPHGYGMRSS TSDEVNCGDE VKAENKSEAA 300 DIKVTLIQTH VNLKIECQRR PGQLLKVIVA LEDLRLTILH LNITSSETSV LYSLNLKIEE 360 DCKLCSASDI AEAVHQIFSF INGS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 167 | RRKRKR |
2 | 181 | 192 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G049100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235293 | 0.0 | AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528761.1 | 0.0 | transcription factor bHLH57 | ||||
TrEMBL | I1KHN8 | 0.0 | I1KHN8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G05500.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6894 | 34 | 49 | Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61950.1 | 8e-70 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G049100.1.p |
Entrez Gene | 100789928 |