PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G047900.1.p
Common NameGLYMA_07G047900, LOC100778190
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 498aa    MW: 56740.6 Da    PI: 6.0475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G047900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.77.1e-47121411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          +p+GfrF+Ptdeelv++yLk+k+ ++++++ ++i+e+d++kvePwd p +  +k+++ ew+fFs+ d ky ++kr nr+tk+gyWk+tg+
  Glyma.07G047900.1.p  12 MPVGFRFRPTDEELVNYYLKHKLLADDFPV-HIIPEIDLCKVEPWDVPeRsVIKSDDPEWFFFSPVDYKYLKSKRFNRTTKRGYWKTTGN 100
                          699***************************.89**************95347777888******************************** PP

                  NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+   +++++g+kktLvf++gr p+g+kt+Wv+hey++
  Glyma.07G047900.1.p 101 DRNVKIPgTSNVIGTKKTLVFHEGRGPRGVKTNWVIHEYHA 141
                          *****9977888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-5310159IPR003441NAC domain
PROSITE profilePS5100551.93312159IPR003441NAC domain
PfamPF023652.1E-2513140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MENNIISICD HMPVGFRFRP TDEELVNYYL KHKLLADDFP VHIIPEIDLC KVEPWDVPER  60
SVIKSDDPEW FFFSPVDYKY LKSKRFNRTT KRGYWKTTGN DRNVKIPGTS NVIGTKKTLV  120
FHEGRGPRGV KTNWVIHEYH AVTSHESQRA FVLCRLMKKA EKKNEGGIEA PTFDEGEPSV  180
HLFSDYGNQV DIIPGVDMEE IFQAVDRAEK FSPPVQRSQT GIGLEDFFAN SPLFNAHFGS  240
ENINMQTSLE VTDDEELVNS FWVDDEEFVI NEERRHCFVN SSTQPKSFRR VYNESSEIDA  300
EVVSNLNEHI SADEYPALKM FQSSYDVRGG TSRLASNHKA NKEKKESIIP DDFWAVETSS  360
CDSTADEPIE ISSSPSTPTR MKNQCHLRPD KFILQRTVAG RPQTQKKVSN NAVSHVEVRK  420
ELLTVKSEKD QKNAQNASLR GNFKNKSQQS SDVNNNGSFF YMETASNRSL FPRSVYLVNV  480
VIGILLLIVI SWDVLSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-381116514171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.281940.0meristem| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G047900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-74AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529865.10.0NAC domain-containing protein 69
TrEMBLK7KZN80.0K7KZN8_SOYBN; Uncharacterized protein
STRINGGLYMA07G05351.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-55NAC domain containing protein 62