PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

AP2

Protein Properties

Length: 580aa MW: 63750.9 Da PI: 6.8225

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G038200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.8	3.6e-15	246	305	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aaka++ a+ k++g Glyma.07G038200.1.p 246 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAAIKYWG 305 78*****************655454478446***********************98 PP
2	AP2	48.1	3e-15	348	399	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.07G038200.1.p 348 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 399 78**************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.18E-16	246	315	IPR016177	DNA-binding domain
Pfam	PF00847	1.6E-11	246	305	IPR001471	AP2/ERF domain
CDD	cd00018	3.71E-21	246	315	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.5E-15	247	314	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.769	247	313	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-29	247	319	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-6	248	259	IPR001471	AP2/ERF domain
Pfam	PF00847	5.9E-10	348	399	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-18	348	409	IPR016177	DNA-binding domain
CDD	cd00018	9.19E-25	348	409	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.4E-18	349	407	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.006	349	407	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-34	349	413	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-6	389	409	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MSNWLGFSLT PHLRIDEEFE RENQERGAGG GGGYHHPSPS SHPHLSVMPL RSDGSLCVAD 60 SFSHSAASQE WRYDSAIGGG NSNEKGPKLE DFLGGYSNSP TKVFCQDTQH DQNQSQNNVS 120 KINVNVAPSF CTNAEIETGE SLANPYPHQS FHAYNDNSHA LIPTNGMYKS WLAQTQFSSD 180 GKPSTEANGC NFQSLSLSMS PGMQNGVGAI SSVQVSEDSR KRVMAKSHAR EPVPRKSIDT 240 FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ VYLGGYDKEE KAAKAYDLAA 300 IKYWGPTTHI NFPLSTYEKE LEEMKHMTRQ EFVANLRRKS SGFSRGASVY RGVTRHHQHG 360 RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS 420 TLIAGDLAKR SPKESPALVP AEDFNSCGSS MPPASQPPPL AITDGEHSDE LSNMMWNANS 480 DVHAQNENGA NINNNVTESS SQQVSPSSNK DALNPQSPKC SVGLPNEFGV SGADYGHGYF 540 TLDGPKYDDG NNENDHMSTN RLGNLGLVNQ VPMFALWNE*

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MSNWLGFSLT PHLRIDEEFE RENQERGAGG GGGYHHPSPS SHPHLSVMPL RSDGSLCVAD  60
SFSHSAASQE WRYDSAIGGG NSNEKGPKLE DFLGGYSNSP TKVFCQDTQH DQNQSQNNVS  120
KINVNVAPSF CTNAEIETGE SLANPYPHQS FHAYNDNSHA LIPTNGMYKS WLAQTQFSSD  180
GKPSTEANGC NFQSLSLSMS PGMQNGVGAI SSVQVSEDSR KRVMAKSHAR EPVPRKSIDT  240
FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ VYLGGYDKEE KAAKAYDLAA  300
IKYWGPTTHI NFPLSTYEKE LEEMKHMTRQ EFVANLRRKS SGFSRGASVY RGVTRHHQHG  360
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT SAVTNFDISR YDVKRICSSS  420
TLIAGDLAKR SPKESPALVP AEDFNSCGSS MPPASQPPPL AITDGEHSDE LSNMMWNANS  480
DVHAQNENGA NINNNVTESS SQQVSPSSNK DALNPQSPKC SVGLPNEFGV SGADYGHGYF  540
TLDGPKYDDG NNENDHMSTN RLGNLGLVNQ VPMFALWNE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.56626	0.0	somatic embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269\|PubMed:15988559}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G038200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235913	0.0	AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583159.1	0.0	AP2-like ethylene-responsive transcription factor AIL1
Refseq	XP_028239191.1	0.0	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q1PFE1	1e-140	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	A0A445JRV5	0.0	A0A445JRV5_GLYSO; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	K7KZJ1	0.0	K7KZJ1_SOYBN; Uncharacterized protein
STRING	GLYMA07G04265.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10274	31	37
Representative plant	OGRP112	17	209

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-137	AP2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.07G038200.1.p
Entrez Gene	100805489

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]