PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G021000.1.p
Common NameGLYMA_07G021000, LOC100807781
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 291aa    MW: 33105.4 Da    PI: 6.6435
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G021000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-163089155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  Glyma.07G021000.1.p 30 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqsKKgRQVYLGAYDDEEAAARAYDLAALKYWG 89
                         57*******************999977777557*************************98 PP
2AP2538.6e-17132183155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Glyma.07G021000.1.p 132 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 183
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-123089IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-183099IPR016177DNA-binding domain
SMARTSM003801.9E-2831103IPR001471AP2/ERF domain
PROSITE profilePS5103220.5873197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-173199IPR001471AP2/ERF domain
PRINTSPR003672.9E-63243IPR001471AP2/ERF domain
CDDcd000185.72E-15132193No hitNo description
SuperFamilySSF541718.5E-18132193IPR016177DNA-binding domain
PfamPF008472.5E-12132183IPR001471AP2/ERF domain
SMARTSM003803.2E-24133197IPR001471AP2/ERF domain
PROSITE profilePS5103218.268133191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17133192IPR001471AP2/ERF domain
PRINTSPR003672.9E-6173193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAKKSQKSLN STGKRTRKSV PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD KNCWNESQSK  60
KGRQVYLGAY DDEEAAARAY DLAALKYWGQ DTILNFPLSN YEEKLKEMEG QSKEEYIGSL  120
RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA AAAYDMAAIE  180
YRGLNAVTNF DLSRYINWPR PKTEENHQTI PSNENVNSNA ELELGSASDE ITEEGVAPSS  240
ESNPSRRTFP EDIQTIFENQ DSGIYTENDD IIFGDLGSFG APIFHYELDV *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G021000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529766.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028238960.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-124AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A445JR610.0A0A445JR61_GLYSO; AP2-like ethylene-responsive transcription factor isoform A
TrEMBLI1KGQ40.0I1KGQ4_SOYBN; Uncharacterized protein
STRINGGLYMA07G02380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-113ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]