PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G016800.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 348aa    MW: 38040.3 Da    PI: 6.3895
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G016800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18239273135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +Cgt kTp+WR gp g+ktLCnaCG+++++ +l
  Glyma.07G016800.1.p 239 CLHCGTEKTPQWRTGPMGPKTLCNACGVRFKSGRL 273
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-7820325IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.466233269IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-17233283IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15236297No hitNo description
Gene3DG3DSA:3.30.50.108.7E-15237271IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.77E-14238285No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003207.0E-16239273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEVPEYFVGS FFGTGGAEQF CPPEKRHSDQ KTGEPFAIDD LLDFSHADAI MSDGFFDNVA  60
GNSTDSSTVT AVDSCNSSIS GSDNRFATTI VPRGFPSDPQ FSGELCVPYD EMAELEWLSN  120
FVEDSFSAEE ELKTLQLLSG AAAASTAIGA KPQTPESSSS TDTLPPFASD DTLRNAPFLH  180
SETPLPGKAR SKRSRAAPGD WSTRLLHLVA TEQEKLPQLK AEPAKKREGT NAECSGRKCL  240
HCGTEKTPQW RTGPMGPKTL CNACGVRFKS GRLVPEYRPA ASPTFMSTKH SNSHRKVLEL  300
RRQKELQRQQ HQQLMSQSSI FGVSNGGDEF LIHHHHQHCG PDFRHVI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.197560.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G016800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530114.30.0GATA transcription factor 9
TrEMBLA0A0R0J5P60.0A0A0R0J5P6_SOYBN; GATA transcription factor
STRINGGLYMA07G01960.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-69GATA transcription factor 9