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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.06G308900.2.p |
Common Name | GLYMA_06G308900 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
YABBY |
Protein Properties |
Length: 189aa MW: 21127.1 Da PI: 8.2991 |
Description |
YABBY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.06G308900.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | YABBY | 224.5 | 2.9e-69 | 6 | 162 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94
++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++llsvn+ + q+ + ++ +s +++ l +ee + +e +s+s+
Glyma.06G308900.2.p 6 MATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDP--QS----QKQLLSFEEPSSC--KELGSSSSK 87
689**************************************************99996..22....2222333332222..222233333 PP
YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++ + e ++e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl
Glyma.06G308900.2.p 88 CNKIAPFHEAVEHEQPRIPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 162
333444568889999**999.9****************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MSMEMMATER VCYVHCNFCN TILAVSVPYS SLLTIVTVRC GHCANLLSVN MGASLQAFPP 60 QDPQSQKQLL SFEEPSSCKE LGSSSSKCNK IAPFHEAVEH EQPRIPPIRP TEKRHRVPSA 120 YNRFIKEEIQ RIKASNPDIS HREAFSSAAK NWAHFPHIHF GLKNLKLDGN KQEKLDQGEG 180 AEKSNGFY*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |