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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.06G308900.1.p |
| Common Name | GLYMA_06G308900 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
YABBY |
| Protein Properties |
Length: 190aa MW: 21319.5 Da PI: 8.3712 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.06G308900.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 177.1 | 1.1e-54 | 26 | 163 | 22 | 170 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111
++vsvP++sl+++vtvrCGhC++llsvn+ + q+ + ++ +++ l +ee + + +++s+ +++ + e ++e pr
Glyma.06G308900.1.p 26 ILVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDP--------QKQLLSFEEPSSCKELGSSSSKCNKI--APFHEAVEHEQPR 105
689*********************************99996........33334444433333333333333333..34568889999** PP
YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl
Glyma.06G308900.1.p 106 IPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 163
999.9****************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 190 aa
Download sequence Send
to blast |
MYVLLCQCVY ISESVLVLAF YFLVYILVSV PYSSLLTIVT VRCGHCANLL SVNMGASLQA 60
FPPQDPQKQL LSFEEPSSCK ELGSSSSKCN KIAPFHEAVE HEQPRIPPIR PTEKRHRVPS 120
AYNRFIKEEI QRIKASNPDI SHREAFSSAA KNWAHFPHIH FGLKNLKLDG NKQEKLDQGE 180
GAEKSNGFY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
