PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G308900.1.p

Common Name

GLYMA_06G308900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 190aa MW: 21319.5 Da PI: 8.3712

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G308900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	177.1	1.1e-54	26	163	22	170
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111 ++vsvP++sl+++vtvrCGhC++llsvn+ + q+ + ++ +++ l +ee + + +++s+ +++ + e ++e pr Glyma.06G308900.1.p 26 ILVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDP--------QKQLLSFEEPSSCKELGSSSSKCNKI--APFHEAVEHEQPR 105 689*******************************99996........33334444433333333333333333..34568889999 PP YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl Glyma.06G308900.1.p 106 IPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 163 999.9****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.3E-59	26	163	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-7	108	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	116	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MYVLLCQCVY ISESVLVLAF YFLVYILVSV PYSSLLTIVT VRCGHCANLL SVNMGASLQA 60 FPPQDPQKQL LSFEEPSSCK ELGSSSSKCN KIAPFHEAVE HEQPRIPPIR PTEKRHRVPS 120 AYNRFIKEEI QRIKASNPDI SHREAFSSAA KNWAHFPHIH FGLKNLKLDG NKQEKLDQGE 180 GAEKSNGFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.56553	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G308900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090571	0.0	BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235782.1	1e-137	protein YABBY 9 isoform 1
Swissprot	Q9XFB0	8e-65	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0R0JTQ3	1e-138	A0A0R0JTQ3_SOYBN; Uncharacterized protein
TrEMBL	A0A445KGD0	1e-137	A0A445KGD0_GLYSO; Putative axial regulator YABBY 2 isoform D
TrEMBL	A0A445KGW6	1e-138	A0A445KGW6_GLYSO; Putative axial regulator YABBY 2 isoform B
STRING	GLYMA06G46560.1	1e-137	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-64	YABBY family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G308900.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]